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Report for CCDS25334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25334.1 Public Mus musculus 11 Arl5c 23 108 98 CCDS HistoryNCBI Gene:217151Re-query CCDS DB by CCDS ID:25334.1Re-query CCDS DB by GeneID:217151See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25334.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042971.15 ENSMUSP00000037214.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042971.15Link to Ensembl Protein Viewer:ENSMUSP00000037214.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000042971Re-query CCDS DB by Protein ID:ENSMUSP00000037214
Original member Current member NCBI NM_207231.1 NP_997114.1 Accepted alive Link to Nucleotide Sequence:NM_207231.1Link to Protein Sequence:NP_997114.1Re-query CCDS DB by Nucleotide ID:NM_207231Re-query CCDS DB by Protein ID:NP_997114Link to BLAST:NP_997114.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997114.1 179 Q6P068 179 100% 0 0

Chromosomal Locations for CCDS 25334.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97990291 97990339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97992282 97992433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97993425 97993508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97994338 97994485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97995067 97995127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97995818 97995863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGGGACAGCTGATAGCCAAGCTGATGCGAATCTTTGGGAGTCAGGAGCACAAAGTCATTATCGTGGGAC
TGGACAATGCAGGGAAGACCACCATTCTCTACCAGTTCCTGACCAATGAGGTTGTTCACACCTGCTCCAC
CATTGGGAGCAACGTGGAAGAAATTGTTCTTCGGAAGACTCACTTCCTCATGTGGGACCTAGGGGGCCAG
GAGGCGCTGCGCTCCACCTGGGACACTTACTACTCTAATGCTGAGTTTGTCATCCTTGTGATAGATAGCA
CAGACCGGAATCGGCTGCTCACCACCCGGGAGGAGCTGTATAAGATGCTGGCCCATGAGGCACTTCAAAA
TGCTTCAGTACTGATCTTTGCCAACAAGCAGGATGTGAAAGACTCCATGACCACAGCAGAGATCTCCCAA
TTTCTCACACTCAGTGCCATCAAAGACCACCCGTGGCATATCCAGGGCTGCTGTGCTCTCACAGGAGAAG
GGCTGCCAGCTGGGCTCCAGTGGATGCAAGCTCAGGCCACCGCCAACTGA

Translation (179 aa):
MGQLIAKLMRIFGSQEHKVIIVGLDNAGKTTILYQFLTNEVVHTCSTIGSNVEEIVLRKTHFLMWDLGGQ
EALRSTWDTYYSNAEFVILVIDSTDRNRLLTTREELYKMLAHEALQNASVLIFANKQDVKDSMTTAEISQ
FLTLSAIKDHPWHIQGCCALTGEGLPAGLQWMQAQATAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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