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Report for CCDS15860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15860.1 Public Mus musculus 2 Cercam 23 108 98 CCDS HistoryNCBI Gene:99151Re-query CCDS DB by CCDS ID:15860.1Re-query CCDS DB by GeneID:99151See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15860.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047521.6 ENSMUSP00000041622.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047521.6Link to Ensembl Protein Viewer:ENSMUSP00000041622.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047521Re-query CCDS DB by Protein ID:ENSMUSP00000041622
Original member Current member NCBI NM_207298.2 NP_997181.1 Accepted alive Link to Nucleotide Sequence:NM_207298.2Link to Protein Sequence:NP_997181.1Re-query CCDS DB by Nucleotide ID:NM_207298Re-query CCDS DB by Protein ID:NP_997181Link to BLAST:NP_997181.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997181.1 592 A3KGW5 592 100% 0 0

Chromosomal Locations for CCDS 15860.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 29869538 29869725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29871023 29871133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29871275 29871392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29872563 29872697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29872808 29873012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29875605 29875724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29875988 29876064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29876161 29876267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29878004 29878136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29880613 29880740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29880915 29881118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29881696 29881948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1779 nt):
ATGCACGTTGCGCGGCTCCTACCTCTGCTGCTCCTGTTGGGGCAGCAGCTCCGGGCTGCCAGTGTCACAG
AGCCGACGCTACCCACCGTGGTCCTTGCCATCCTGGCCCGCAATGCTGAACACTCTCTGCCCCACTACCT
GGGTGCGCTGGAGCGCCTGGACTACCCCCGGGCCAGGCTGGCCCTCTGGTGTGCCACAGATCACAACATG
GACAACACCACAGGGATGCTCCGGGAATGGCTGGCTGCTGTGGGTCGGGACTATGCGACTGTCGTCTGGA
AGCCTGAGGAGGAGGCCAGGTCCTACCCAGATGAACAGGGTCCCAAGCACTGGACCAAAGAACGGCATCA
GTTTTTGATGGAGCTGAGGCAGGAAGCACTGGCCTTTGCCAGGGACTGGGGAGCTGACTACATCCTGTTC
GCAGATACAGACAACATTCTTACTAACAACCAGACACTGAAGCTTCTCATAGATCGGCAGCTGCCGGTGG
TGGCCCCGATGCTGGACTCTCAGACCTATTATTCCAACTTTTGGTGTGGGATCACTCCACAGGGCTACTA
TCGCCGCACGGCTGAATACTTCCCTACTAAGAACCGCCAGCGCCAGGGCTGCTTCCGGGTCCCTATGGTC
CACTCTACCTTCCTGCTGTCCTTGCAGACTGAGGAAACAGCCCGGCTTGCCTTCTACCCTCCTCATCCCA
ACTACAGTTGGCCTTTTGATGACATCATTGTCTTTGCCTATGCCTGCCAGGCTGCTGGGGTCTCGATGCA
TGTGTGCAATGACCATCGTTACGGGTACATGAATGTGGTAGTGAAGCCCCACCAGAGCCTGGAGGAAGAG
AAGACGAACTTTATCCACCTCATTTTGGAAGCACTAGTGGATGGGCCCCCCATGCTGGCCTCAGCTCATG
TATCTCGGCCCCCAAAGAAGCTCAGCAAAATGGGGTTTGATGAAGTCTTTGTCATCAGCCTGGCCCGCAG
ACCCCAGCGCCGGGCTCGAATGCTGAGCTCTCTCTGGGAGATGGAGATATCTGCCCAGGTGGTAGATGCT
GTAGATGGCAGGACACTCAACAGCAGTATCCTCAAACATCTCGGTGTGGACCTGCTCCCTGGCTACCAAG
ACCCCTATTCAGGCCACACACTGACCAAGGGTGAGGTGGGCTGCTTCCTCAGCCACTACTCCATCTGGGA
AGAGGTGGTTGCCAGGGGCCTGGCCCGGGTCGTGGTGTTTGAGGATGACGTACGCTTCAAGGACAACTTC
CGGAGGCGGCTAGAACGGCTGATGGAGGACGTGCTGATTCAGAAGCTGTCATGGGACTTGATCTACCTTG
GCCGGAAGCAGGTGAACCCTGAGGAGGAAGTGGCTGTGGAGGGGCTGCCTGGTCTCGTGGTGGCCGGGTA
TTCCTACTGGACACTTGCGTACACCTTGAGCCTGGCAGGCGCTCGCAAACTGTTAGCATCCCAGCCCCTG
CATCGCATGCTACCTGTGGATGAATTCCTGCCTGTCATGTTTGATCGCCACCCAAATGACCAGTACAAAG
CATACTTCTGGCCTCGGGACCTCCAAGCCTTCTCAGCTAGGCCTCTGCTTGCCTCCCCCACCCACTATTC
GGGAGACGCCGAGTGGCTCAGTGACACAGAGACATCCTCCCCCTGGGACGATGACAGTGGTCGCCTCATT
AGCCAGACTGGCTCTCAAAAGGCCCTTCGTGGCCCCCACCTGCACCTGACTGGCAGCAGTGGACACAGCC
TCCATCCTCACCACAGGGATGAACTGTAG

Translation (592 aa):
MHVARLLPLLLLLGQQLRAASVTEPTLPTVVLAILARNAEHSLPHYLGALERLDYPRARLALWCATDHNM
DNTTGMLREWLAAVGRDYATVVWKPEEEARSYPDEQGPKHWTKERHQFLMELRQEALAFARDWGADYILF
ADTDNILTNNQTLKLLIDRQLPVVAPMLDSQTYYSNFWCGITPQGYYRRTAEYFPTKNRQRQGCFRVPMV
HSTFLLSLQTEETARLAFYPPHPNYSWPFDDIIVFAYACQAAGVSMHVCNDHRYGYMNVVVKPHQSLEEE
KTNFIHLILEALVDGPPMLASAHVSRPPKKLSKMGFDEVFVISLARRPQRRARMLSSLWEMEISAQVVDA
VDGRTLNSSILKHLGVDLLPGYQDPYSGHTLTKGEVGCFLSHYSIWEEVVARGLARVVVFEDDVRFKDNF
RRRLERLMEDVLIQKLSWDLIYLGRKQVNPEEEVAVEGLPGLVVAGYSYWTLAYTLSLAGARKLLASQPL
HRMLPVDEFLPVMFDRHPNDQYKAYFWPRDLQAFSARPLLASPTHYSGDAEWLSDTETSSPWDDDSGRLI
SQTGSQKALRGPHLHLTGSSGHSLHPHHRDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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