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Report for CCDS60314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60314.1 Public Homo sapiens 1 TAGLN2 24 110 108 CCDS HistoryNCBI Gene:8407Re-query CCDS DB by CCDS ID:60314.1Re-query CCDS DB by GeneID:8407See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60314.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368096.5 ENSP00000357076.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368096.5Link to Ensembl Protein Viewer:ENSP00000357076.1Re-query CCDS DB by Nucleotide ID:ENST00000368096Re-query CCDS DB by Protein ID:ENSP00000357076
Original member Current member NCBI NM_001277224.2 NP_001264153.1 Accepted alive Link to Nucleotide Sequence:NM_001277224.2Link to Protein Sequence:NP_001264153.1Re-query CCDS DB by Nucleotide ID:NM_001277224Re-query CCDS DB by Protein ID:NP_001264153Link to BLAST:NP_001264153.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264153.1 220 P37802-2 220 100% 0 0

Chromosomal Locations for CCDS 60314.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 159918800 159918941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 159919274 159919376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 159919661 159919835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 159920330 159920537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 159923436 159923470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGTCCGCCTTTTCTTTGGCTTTGGCTTTGGTGAGCTCCCCGCAGCCACCGCCACCCATTGGAATGGCCA
AC
AGGGGACCTGCATATGGCCTGAGCCGGGAGGTGCAGCAGAAGATTGAGAAACAATATGATGCAGATCT
G
GAGCAGATCCTGATCCAGTGGATCACCACCCAGTGCCGAAAGGATGTGGGCCGGCCCCAGCCTGGACGC
GAG
AACTTCCAGAACTGGCTCAAGGATGGCACGGTGCTATGTGAGCTCATTAATGCACTGTACCCCGAGG
GG
CAGGCCCCAGTAAAGAAGATCCAGGCCTCCACCATGGCCTTCAAGCAGATGGAGCAGATCTCTCAGTT
C
CTGCAAGCAGCTGAGCGCTATGGCATTAACACCACTGACATCTTCCAAACTGTGGACCTCTGGGAAGGA
AAG
AACATGGCCTGTGTGCAGCGGACGCTGATGAATCTGGGTGGGCTGGCAGTAGCCCGAGATGATGGGC
TC
TTCTCTGGGGATCCCAACTGGTTCCCTAAGAAATCCAAGGAGAATCCTCGGAACTTCTCGGATAACCA
G
CTGCAAGAGGGCAAGAACGTGATCGGGTTACAGATGGGCACCAACCGCGGGGCGTCTCAGGCAGGCATG
ACT
GGCTACGGGATGCCACGCCAGATCCTCTGA


Translation (220 aa):
MSAFSLALALVSSPQPPPPIGMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGR
E
NFQNWLKDGT
VLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG
K
NMACVQRTLMNLGGLAVARDDGLFSGDPNWFP
KKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGM
T
GYGMPRQIL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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