NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18687.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18687.1 Public Mus musculus 4 Sync 23 108 98 CCDS HistoryNCBI Gene:68828Re-query CCDS DB by CCDS ID:18687.1Re-query CCDS DB by GeneID:68828See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18687.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102599.3 ENSMUSP00000099659.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102599.3Link to Ensembl Protein Viewer:ENSMUSP00000099659.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102599Re-query CCDS DB by Protein ID:ENSMUSP00000099659
Original member Current member NCBI NM_023485.3 NP_075974.3 Accepted alive Link to Nucleotide Sequence:NM_023485.3Link to Protein Sequence:NP_075974.3Re-query CCDS DB by Nucleotide ID:NM_023485Re-query CCDS DB by Protein ID:NP_075974Link to BLAST:NP_075974.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075974.3 470 Q9EPM5-1 470 100% 0 0

Chromosomal Locations for CCDS 18687.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129287739 129287788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129293227 129294376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129306342 129306466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129306628 129306704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129308042 129308052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGGCCAGCCCGGAACCCCTGCGCGGCGGGGACGGCGCCCGGGCCTCGAGGGAACCACACACCGAGGCGA
GTTTTCCTCTTCAGGAGTCAGAATCCCCGAAGGAGGCCAAGACCTTTAACCCAGAGGCCACTCTGTCTTT
GGAGGGGACTGTGAACCTAGAGGACATTCTCTATCTGGGGGCATCGGGGGACTTTGAAGAGAGTTTTTAT
GAGGAAGAATATGAGAAGCCAGCACTGACACTGTTTATCGACGAATCGAGGCAGCCAGACGAGGCGCTGG
GCCTAGAAGAGCCCGTGCGCCCAGAGGAGATGCTGTCTGTGGAGGAATCCGTGACGCCAGATGAGGTGCA
AATTTCAGAGCAGCCTGTGGAGCCAGCTAAGAGCCCAACTGCTTGTGAGGGAGAAATGGTGGCCACGGAG
GGAAGCCTGCCTGCTCAACCGATTCCCAACACCGAGGAGGATCCCCTCAGCGTGGAGGACCTGGAGCGGC
TGGAAGCTCGTTTCCAGCAGTGTGTACAAGCCGTGTCCCAGCTGGAAGAGGAGAGGGACCAGCTAATCCA
CGAGCTCGTGCTACTCCGGGAGCCAGCCCTGCAGGAGGTGCAGCAAGTCCACCAGGACATCCTGGCTGCC
TACAAGCTCCACGCACAGGCAGAGCTGGAGAGGGACGGGCTCAGGGAGGAGATCCGGACGGTGAAGCAGA
AGCTGTTCAAGGTGACCAAGGAATGCGTGGCTTACCAATACCAGCTGGAGTGCCGTCAGCAGGATGTGGC
TCAGTTTGCCGACTGCAGGGAAGCGCTGACCACTCGGGCAGCCCAGCTCTCGGAAGAACTGACCCAGCTC
CGAGATGCCTGTCAGAAGCAGAAGGAGCAGTTACAGCAACAACTAGAAGCACCCCCGACCCAGAGCGATG
GGCACTTTCTCCAGGAGAGCCGACGGCTGTCGACACAGTTTGAAAATCTCATGGCCGAGAGCCGCCAGGG
CCTGGAGGAGGAGTATGAGCCTCAGCTGCTCCGGCTCCTGGAAAGGAAAGAGGCCGGGACCAAAGCTCTA
CAGGACACCCAGGCGGAGATCCAGGAGATGAGGGAGGCTCTGCGACCCCTGGAAGCAGAGGCCCGGCAGC
TCCAACTTCAGAACAGGAACCTGGAGGACCAGATCACGCTCGTGAGGCAAAAACGCGATGAAGAGGTTCA
ACAGTACAGGGAGCAGCTGGAGGAGATGGAGGAGAGACAGAGGCAGTTGCGCAGTGGGGTGCAAGTTCAG
CAACAGAAGAACAAGGAGATGGAGCGGCTGAGGATGAGCCTTGCTGAAGAGCTTTCCACATATAAGGCTA
TGCTACCCAAGAGTCTGGAACAGGCTGATGCACCCACTTCTCAGGCAGGTGGAGTCGAGGCACAATCCCC
AGGGACTGTTTAG

Translation (470 aa):
MASPEPLRGGDGARASREPHTEASFPLQESESPKEAKTFNPEATLSLEGTVNLEDILYLGASGDFEESFY
EEEYEKPALTLFIDESRQPDEALGLEEPVRPEEMLSVEESVTPDEVQISEQPVEPAKSPTACEGEMVATE
GSLPAQPIPNTEEDPLSVEDLERLEARFQQCVQAVSQLEEERDQLIHELVLLREPALQEVQQVHQDILAA
YKLHAQAELERDGLREEIRTVKQKLFKVTKECVAYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQL
RDACQKQKEQLQQQLEAPPTQSDGHFLQESRRLSTQFENLMAESRQGLEEEYEPQLLRLLERKEAGTKAL
QDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQITLVRQKRDEEVQQYREQLEEMEERQRQLRSGVQVQ
QQKNKEMERLRMSLAEELSTYKAMLPKSLEQADAPTSQAGGVEAQSPGTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH