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Report for CCDS20606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20606.1 Public Mus musculus 6 Ybx3 23 108 98 CCDS HistoryNCBI Gene:56449Re-query CCDS DB by CCDS ID:20606.1Re-query CCDS DB by GeneID:56449See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20606.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032309.12 ENSMUSP00000032309.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032309.12Link to Ensembl Protein Viewer:ENSMUSP00000032309.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032309Re-query CCDS DB by Protein ID:ENSMUSP00000032309
Original member Current member NCBI NM_139117.2 NP_620817.2 Accepted alive Link to Nucleotide Sequence:NM_139117.2Link to Protein Sequence:NP_620817.2Re-query CCDS DB by Nucleotide ID:NM_139117Re-query CCDS DB by Protein ID:NP_620817Link to BLAST:NP_620817.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620817.2 361 Q9JKB3-1 361 100% 0 0

Chromosomal Locations for CCDS 20606.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 131367798 131367863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 131368389 131368560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 131370323 131370414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 131375974 131376180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 131379358 131379480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 131380876 131380965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 131383501 131383534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 131384503 131384566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 131388018 131388255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGAGCGAGGCGGGCGAGGCCACCACCGGCGGCACCACGCTCCCGCAGGCCGCGGCCGACGCGCCCGCCG
CGGCGCCCCCGGACCCCGCGCCTAAGAGCCCGGCGGCCAGCGGCGCGCCCCAGGCCCCGGCGCCCGCCGC
GCTGCTCGCGGGGAGCCCCGGCGGAGACGCAGCCCCCGGGCCCGCCCCGGCCTCATCAGCCCCCGCGGGC
GGCGAGGACGCGGAGAAGAAAGTTCTCGCCACCAAAGTCCTTGGCACTGTCAAATGGTTCAACGTCAGAA
ATGGATATGGATTTATAAACCGAAATGACACCAAAGAAGATGTGTTTGTACACCAGACGGCCATCAAGAA
AAACAACCCACGCAAGTATCTGCGCAGTGTGGGGGATGGAGAAACTGTAGAGTTTGATGTAGTTGAAGGA
GAAAAGGGTGCTGAAGCAGCAAACGTGACTGGCCCAGATGGAGTTCCTGTAGAAGGGAGTCGCTATGCTG
CTGACCGGCGCCGGTACAGACGCGGCTACTATGGCAGGCGCCGTGGACCTCCCCGTAATTACGCTGGGGA
GGAGGAGGAGGAAGGGAGCGGCAGCAGTGAAGGATTTGAGCCCCCTGCCGCAGATGGGCAGTTCTCTGGG
GCCAGGAATCAGCTGCGCCGCCCCCAGTATCGCCCTCCATACCGGCAGCGGCGTTTCCCGCCTTACCACG
TGGGACAGACCTTTGACCGTCGCTCACGGGTCTTTCCCCATCCCAACAGAATGCAGGCTGGTGAGATTGG
GGAGATGAAGGATGGAGTCCCCGAGGGAACACAGCTCCAGGCTCATCGGAATCCGACTTACCGCCCGAGG
TTCCGCAGGGGACCTGCTCGCCCACGACCTGCCCCTGCTATTGGAGAGGCTGAAGACAAAGAAAACCAGC
AAGCGGCTAATGGTCCAAACCAGCCGTCTGCCCGCCGTGGATTCCGACGTCCCTACAACTATAGGCGCCG
TTCCCGTCCCCTCAACGCTGTTTCACAAGATGGCAAAGAGACCAAGGCAGGTGAAGCACCAACTGAGAAC
CCCGCTCCAGCTACCGAACAGAGCAGTGCCGAGTGA

Translation (361 aa):
MSEAGEATTGGTTLPQAAADAPAAAPPDPAPKSPAASGAPQAPAPAALLAGSPGGDAAPGPAPASSAPAG
GEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG
EKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGFEPPAADGQFSG
ARNQLRRPQYRPPYRQRRFPPYHVGQTFDRRSRVFPHPNRMQAGEIGEMKDGVPEGTQLQAHRNPTYRPR
FRRGPARPRPAPAIGEAEDKENQQAANGPNQPSARRGFRRPYNYRRRSRPLNAVSQDGKETKAGEAPTEN
PAPATEQSSAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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