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Report for CCDS59286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59286.1 Public Homo sapiens 17 KRTAP9-6 24 110 108 CCDS HistoryNCBI Gene:100507608Re-query CCDS DB by CCDS ID:59286.1Re-query CCDS DB by GeneID:100507608See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 59286.1
This gene is one of several keratin-associated protein 9 (KRTAP9) genes located on chromosome 17, as described in PMID:11279113. There is no transcript evidence specific for the location of this gene, and therefore this CCDS representation has an inferred structure based on transcript alignments from other family members.

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 59286.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000391355.2 ENSP00000375150.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000391355.2Link to Ensembl Protein Viewer:ENSP00000375150.1Re-query CCDS DB by Nucleotide ID:ENST00000391355Re-query CCDS DB by Protein ID:ENSP00000375150
Original member Current member NCBI NM_001277331.1 NP_001264260.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001277331.1Link to Protein Sequence:NP_001264260.1Re-query CCDS DB by Nucleotide ID:NM_001277331Re-query CCDS DB by Protein ID:NP_001264260Link to BLAST:NP_001264260.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264260.1 160 A8MVA2 160 100% 0 0

Chromosomal Locations for CCDS 59286.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 41265378 41265860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGACCCACTGTTGCTCCCCTGGCTGTCAGCCTACCTGCTGCAGGACCACTTGCTGCAGGACTACCTGCT
GGCAGCCCACCATTGTGACCACCTGCAGCAGCACACCCTGCTGCCAGCCCTCCTGCTGTGTGTCCAGCTG
CTGCCAGCCTTACTGCCACCCAACTTGCTGTCAAAACACCTGCTGCAGGACCACCTGCTGCCAGCCCACC
TGTGTGACCAGCTGCTGCCAGCCTTCCTGCTGCAGCACACCCTGCTACCAGCCCATCTGCTGTGGGTCCA
GCTGCTGTGGCCAAACCAGCTGTGGGTCCAGCTGTGGCCAGAGCAGCTCCTGTGCACCTGTGTACTGCAG
AAGAACCTGCTACCACCCCACGACTGTCTGCCTGCCTGGTTGCCTCAACCAGAGCTGTGGATCCAGCTGC
TGCCAGCCCTGCTACTGCCCAGCCTGCTGTGTGTCCAGCTGCTGCCAGCATTCTTGTTGCTGA

Translation (160 aa):
MTHCCSPGCQPTCCRTTCCRTTCWQPTIVTTCSSTPCCQPSCCVSSCCQPYCHPTCCQNTCCRTTCCQPT
CVTSCCQPSCCSTPCYQPICCGSSCCGQTSCGSSCGQSSSCAPVYCRRTCYHPTTVCLPGCLNQSCGSSC
CQPCYCPACCVSSCCQHSCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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