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Report for CCDS25662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25662.1 Public Mus musculus 11 Srp68 23 108 98 CCDS HistoryNCBI Gene:217337Re-query CCDS DB by CCDS ID:25662.1Re-query CCDS DB by GeneID:217337See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25662.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021133.15 ENSMUSP00000021133.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021133.15Link to Ensembl Protein Viewer:ENSMUSP00000021133.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000021133Re-query CCDS DB by Protein ID:ENSMUSP00000021133
Original member Current member NCBI NM_146032.3 NP_666144.3 Accepted alive Link to Nucleotide Sequence:NM_146032.3Link to Protein Sequence:NP_666144.3Re-query CCDS DB by Nucleotide ID:NM_146032Re-query CCDS DB by Protein ID:NP_666144Link to BLAST:NP_666144.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666144.3 625 Q8BMA6 625 100% 0 0

Chromosomal Locations for CCDS 25662.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116245703 116245930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116246220 116246272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116246645 116246720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116247816 116247945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116248731 116248825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116250736 116250892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116252729 116252793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116254302 116254400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116260794 116260934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116261745 116261827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116262860 116262969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116263215 116263297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116265357 116265552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116268274 116268387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116271913 116271979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116273926 116274106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGGCTGCTGAGAAGCAGATCCCGGGTGGTGGTAGTGGTGGTGGTGGAAGCGGCAGCGGCGGCGGCGGCG
GAGGGAGCGGTGGCGGACGCAGTGCCGGAGGAGACGAGAATAAAGAAAACGAACGCCCTTCAGCCGGATC
GAAGGCAAACAAAGAGTTCGGGGACAGCCTGAGTTTGGAGATTCTGCAGATCATTAAGGAGTCGCAGCAG
CAGCATGGCTTACGGCACGGAGACTTCCAGCGGTACAGGGGCTACTGTTCTCGAAGACAAAGACGCCTCC
GGAAAACACTCAACTTTAAGATGGGGAACAGACACAAATTCACGGGGAAGAAAGTAACGGAGGAGCTCCT
GACTGATAACAGATACTTGCTGCTGGTGCTGATGGATGCAGAAAGAGCCTGGAGCTACGCCATGCAGCTC
AAACAGGAAGCCAACACCGAGCCGCGGAAACGGTTTCACTTGCTGTCTCGCCTTCGAAAAGCCGTGAAGC
ATGCAGAGGAACTGGAGCGCTTGTGTGAGAGCAACCGGGTGGATGCCAAGACCAAGCTAGAGGCTCAGGC
CTACACGGCTTACCTCTCAGGAATGTTGCGCTTTGAACATCAAGAGTGGAAATCTGCCATTGAGGCTTTC
AACAAATGCAAAACTATCTATGAGAAGCTAGCCAGTGCATTCACAGAGGAGCAGGCTGTGTTGTACAACC
AGCGTGTAGAAGAGATCTCGCCCAACATCCGCTACTGTGCATACAACATTGGGGACCAGTCAGCTATCAA
TGAGCTCATGCAGATGAGACTAAGGTCTGGGGGCACAGAGGGGCTCCTTGCTGAAAAACTTGAGGCCTTG
ATCACTCAGACTCGAGCCAAGCAGGCGGCGACCATGAGTGAGGTGGAGTGGCGAGGCCGGACGGTCCCCG
TGAAGATCGACAAAGTGAGGATCTTCCTCCTGGGCCTGGCCGACAACGAGGCCGCCATCGTCCAGGCTGA
AAGTGAAGAAACGAAGGAGCGTCTGTTCGAGTCCATGCTGAGTGAGTGCCGAGACGCCCTCCAAGCCGTG
AGGGAAGAGCTCAAGCCCGATCAGAAGCAGAGAGACTATGCCCTTGATGGAGAGTCTGGGAAGGTGTCAA
ATCTCCAGTACCTGCACAGCTACCTGACCTACATCAAGCTGTCAACAGCAATCAGGCGAAACGAGAACAT
GGCTAAAGGCTTGCACAGGGCTCTGCTGCAGCAGCAGCCGGAAGATGACAGCAAGCGCTCTCCCAGGCCT
CAGGACCTCATCCGGCTCTATGACATCATTCTGCAGAATCTGGTGGAATTGCTGCAGCTTCCTGGCTTAG
AAGAGGACAGAACCTTCCAGAAAGAGATAAGCCTCAAGACCCTGGTGTTCAAAGCTTACAGGTGTTTCTT
CATTGCTCAGTCTTACGTGCTGGTGAAGAAGTGGAGCGAAGCCCTCGTCCTGTACGACAGAGTTCTCAAA
TATGCAAATGAAGTGAGTTCTCACGGAGGAGCCTCCAAGAACAGCCTGAAGGACCTGCCCGACGTGCAAG
AACTCATCACTCAAGTGCGGTCAGAGAAGTGCTCGCTGCAGGCCGCAGCCATCCTGGATGCAAACGACTC
TCATCAAACAGACACCTCATCCCAAGTCAAAGACAATACGCCTCTGGTTGAACGGTTTGAGTCCTTTTGC
CTGGACCCGTCCCTGGTCACCAAACAAGCCAACCTCGTGCACTTCCCACCAGGGTTCCAGCCCATCCCTT
GCAAGCCTTTGTTCTTTGACCTGGCCCTCAACCACGTGGCCTTCCCACCCCTTGAGGACAAATTGGAGCA
GAAGACTAAGAGTGGCCTCACAGGCTACATCAAGGGCATCTTTGGTTTCAGGAGCTAA

Translation (625 aa):
MAAEKQIPGGGSGGGGSGSGGGGGGSGGGRSAGGDENKENERPSAGSKANKEFGDSLSLEILQIIKESQQ
QHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKKVTEELLTDNRYLLLVLMDAERAWSYAMQL
KQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAKTKLEAQAYTAYLSGMLRFEHQEWKSAIEAF
NKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEAL
ITQTRAKQAATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAIVQAESEETKERLFESMLSECRDALQAV
REELKPDQKQRDYALDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLHRALLQQQPEDDSKRSPRP
QDLIRLYDIILQNLVELLQLPGLEEDRTFQKEISLKTLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLK
YANEVSSHGGASKNSLKDLPDVQELITQVRSEKCSLQAAAILDANDSHQTDTSSQVKDNTPLVERFESFC
LDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTKSGLTGYIKGIFGFRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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