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Report for CCDS9960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9960.1 Public Homo sapiens 14 WARS1 24 110 108 CCDS HistoryNCBI Gene:7453Re-query CCDS DB by CCDS ID:9960.1Re-query CCDS DB by GeneID:7453See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9960.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355338.6 ENSP00000347495.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355338.6Link to Ensembl Protein Viewer:ENSP00000347495.2Re-query CCDS DB by Nucleotide ID:ENST00000355338Re-query CCDS DB by Protein ID:ENSP00000347495
Original member Current member EBI ENST00000392882.7 ENSP00000376620.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392882.7Link to Ensembl Protein Viewer:ENSP00000376620.2Re-query CCDS DB by Nucleotide ID:ENST00000392882Re-query CCDS DB by Protein ID:ENSP00000376620
Original member Current member EBI ENST00000557135.5 ENSP00000451460.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000557135.5Link to Ensembl Protein Viewer:ENSP00000451460.1Re-query CCDS DB by Nucleotide ID:ENST00000557135Re-query CCDS DB by Protein ID:ENSP00000451460
Original member Current member NCBI NM_004184.4 NP_004175.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004184.4Link to Protein Sequence:NP_004175.2Re-query CCDS DB by Nucleotide ID:NM_004184Re-query CCDS DB by Protein ID:NP_004175Link to BLAST:NP_004175.2
Original member Current member NCBI NM_173701.2 NP_776049.1 Accepted alive Link to Nucleotide Sequence:NM_173701.2Link to Protein Sequence:NP_776049.1Re-query CCDS DB by Nucleotide ID:NM_173701Re-query CCDS DB by Protein ID:NP_776049Link to BLAST:NP_776049.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004175.2 471 P23381-1 471 100% 0 0
NP_776049.1 471 P23381-1 471 100% 0 0

Chromosomal Locations for CCDS 9960.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 100334875 100335036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100337062 100337202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100342398 100342571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100343275 100343387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100346746 100346846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100353687 100353869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100354447 100354566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100360554 100360662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100361708 100361921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100369087 100369185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGCCCAACAGTGAGCCCGCATCTCTGCTGGAGCTGTTCAACAGCATCGCCACACAAGGGGAGCTCGTAA
GGTCCCTCAAAGCGGGAAATGCGTCAAAGGATGAAATTGATTCTGCAGTAAAGATGTTGGTGTCATTAAA
AATGAGCTACAAAGCTGCCGCGGGGGAGGATTACAAGGCTGACTGTCCTCCAGGGAACCCAGCACCTACC
AGTAATCATGGCCCAGATGCCACAGAAGCTGAAGAGGATTTTGTGGACCCATGGACAGTACAGACAAGCA
GTGCAAAAGGCATAGACTACGATAAGCTCATTGTTCGGTTTGGAAGTAGTAAAATTGACAAAGAGCTAAT
AAACCGAATAGAGAGAGCCACCGGCCAAAGACCACACCACTTCCTGCGCAGAGGCATCTTCTTCTCACAC
AGAGATATGAATCAGGTTCTTGATGCCTATGAAAATAAGAAGCCATTTTATCTGTACACGGGCCGGGGCC
CCTCTTCTGAAGCAATGCATGTAGGTCACCTCATTCCATTTATTTTCACAAAGTGGCTCCAGGATGTATT
TAACGTGCCCTTGGTCATCCAGATGACGGATGACGAGAAGTATCTGTGGAAGGACCTGACCCTGGACCAG
GCCTATAGCTATGCTGTGGAGAATGCCAAGGACATCATCGCCTGTGGCTTTGACATCAACAAGACTTTCA
TATTCTCTGACCTGGACTACATGGGGATGAGCTCAGGTTTCTACAAAAATGTGGTGAAGATTCAAAAGCA
TGTTACCTTCAACCAAGTGAAAGGCATTTTCGGCTTCACTGACAGCGACTGCATTGGGAAGATCAGTTTT
CCTGCCATCCAGGCTGCTCCCTCCTTCAGCAACTCATTCCCACAGATCTTCCGAGACAGGACGGATATCC
AGTGCCTTATCCCATGTGCCATTGACCAGGATCCTTACTTTAGAATGACAAGGGACGTCGCCCCCAGGAT
CGGCTATCCTAAACCAGCCCTGCTGCACTCCACCTTCTTCCCAGCCCTGCAGGGCGCCCAGACCAAAATG
AGTGCCAGCGACCCCAACTCCTCCATCTTCCTCACCGACACGGCCAAGCAGATCAAAACCAAGGTCAATA
AGCATGCGTTTTCTGGAGGGAGAGACACCATCGAGGAGCACAGGCAGTTTGGGGGCAACTGTGATGTGGA
CGTGTCTTTCATGTACCTGACCTTCTTCCTCGAGGACGACGACAAGCTCGAGCAGATCAGGAAGGATTAC
ACCAGCGGAGCCATGCTCACCGGTGAGCTCAAGAAGGCACTCATAGAGGTTCTGCAGCCCTTGATCGCAG
AGCACCAGGCCCGGCGCAAGGAGGTCACGGATGAGATAGTGAAAGAGTTCATGACTCCCCGGAAGCTGTC
CTTCGACTTTCAGTAG

Translation (471 aa):
MPNSEPASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYKADCPPGNPAPT
SNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSH
RDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQ
AYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISF
PAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKM
SASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDY
TSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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