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Report for CCDS88742.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88742.1 Public Mus musculus 15 Retreg1 23 108 98 CCDS HistoryNCBI Gene:66270Re-query CCDS DB by CCDS ID:88742.1Re-query CCDS DB by GeneID:66270See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88742.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228306.1 ENSMUSP00000154070.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228306.1Link to Ensembl Protein Viewer:ENSMUSP00000154070.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228306Re-query CCDS DB by Protein ID:ENSMUSP00000154070
Original member Current member NCBI NM_001277317.1 NP_001264246.1 Accepted alive Link to Nucleotide Sequence:NM_001277317.1Link to Protein Sequence:NP_001264246.1Re-query CCDS DB by Nucleotide ID:NM_001277317Re-query CCDS DB by Protein ID:NP_001264246Link to BLAST:NP_001264246.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264246.1 346 Q8VE91-3 346 100% 0 0

Chromosomal Locations for CCDS 88742.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 25942777 25942781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25964224 25964350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25966633 25966717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25968407 25968544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25969796 25969860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25970098 25970224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25971553 25972046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGAGCTGGGAAGTCATCAATTCCAAGCCAGATGAAAGAGCCAGACTGAGCCAGTGCATTGCAGAATCAT
GGATGAATTTCAGCATGTTTCTTCAAGAAATGTCTCTTTTTAAACAGCAGAGTCCTGGCAAGTTTTGCCT
CCTGGTCTGCAGTGTGTGCACATTTTTTACAATCTTGGGAAGTTACATTCCTGGGGTCATACTCAGCTAC
CTTCTGTTACTGTTTGCTTTTTTGTGTCCACTGTTTAAATGTAATGATATTGGACAAAAAATATACAGCA
AAGTCAAGTCCATTCTATTAAAACTAGATTTTGGAATTGGAGAATATATTAACCAGAAGAAACGTGAGAG
ATCTGAAGCAGATAAAGAAAAAAGTCACAAGGATGACAGTGAATTAGACTTTTCAGCTCTTTGTCCTAAG
ATTAGCCTCACAGTTGCTGCCAAAGAGTTATCTGTGTCAGACACAGATGTGTCAGAAGTCTCTTGGACTG
ACAATGGGACCTTCAACCTTTCAGAGGGGTACACTCCGCAGACAGACACTTCTGACGATCTTGACCGGCC
CAGTGAGGAAGTTTTCTCTCGAGATCTTTCAGATTTTCCATCTCTGGAAAATGGGACGGGAACAAATGAT
GAAGATGAATTAAGCCTGGGCTTACCCACAGAGCTCAAGAGAAAGAAGCAGCAGTTGGATAGTGCTCACA
GACCAAGCAAAGAACGGCAGTCGGCAGCTGGCCTCTCACTTCCTCTCAAGAGCGACCAAGCCCTTCACTT
GATGAGCAACCTGGCTGGGGATGTCATCACAGCCGCCATGACGGCTGCCATCAAAGACCAGCTAGAAGGA
GCCCGGCAGGCACTCACTCAGGTGGCGCCCACTGCGGGAGAGGACACAGACACTGAGGAGGGGGATGACT
TTGAACTACTTGACCAGGCAGAGCTAGATCAAATTGAGAGTGAGCTGGGACTAACACAAGACCAAGGGGC
AGAAGCCCAGCAAAGTAAGAAATCCTCAGGCTTCCTCTCCAATCTGCTTGGAGGCCATTAA

Translation (346 aa):
MSWEVINSKPDERARLSQCIAESWMNFSMFLQEMSLFKQQSPGKFCLLVCSVCTFFTILGSYIPGVILSY
LLLLFAFLCPLFKCNDIGQKIYSKVKSILLKLDFGIGEYINQKKRERSEADKEKSHKDDSELDFSALCPK
ISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSDDLDRPSEEVFSRDLSDFPSLENGTGTND
EDELSLGLPTELKRKKQQLDSAHRPSKERQSAAGLSLPLKSDQALHLMSNLAGDVITAAMTAAIKDQLEG
ARQALTQVAPTAGEDTDTEEGDDFELLDQAELDQIESELGLTQDQGAEAQQSKKSSGFLSNLLGGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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