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Report for CCDS79195.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79195.1 Public Mus musculus 13 Spock1 23 108 98 CCDS HistoryNCBI Gene:20745Re-query CCDS DB by CCDS ID:79195.1Re-query CCDS DB by GeneID:20745See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79195.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000185502.6 ENSMUSP00000140409.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185502.6Link to Ensembl Protein Viewer:ENSMUSP00000140409.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185502Re-query CCDS DB by Protein ID:ENSMUSP00000140409
Original member Current member NCBI NM_009262.3 NP_033288.2 Accepted alive Link to Nucleotide Sequence:NM_009262.3Link to Protein Sequence:NP_033288.2Re-query CCDS DB by Nucleotide ID:NM_009262Re-query CCDS DB by Protein ID:NP_033288Link to BLAST:NP_033288.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033288.2 442 Q62288 442 99.3213% 0 3

Chromosomal Locations for CCDS 79195.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 57429295 57429485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57430289 57430426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57436110 57436172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57440321 57440542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57444307 57444423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57512692 57512806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57556680 57556806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57587619 57587733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57696110 57696155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57702304 57702312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57907402 57907587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGCCAGCGATCGCGGTGCTCGCGGCGGCCGCCGCGGCGTGGTGCTTCCTCCAAGTGGACAGCCGGCACC
TGGACGCGCTGGCCGGTGGCGCGGCCCTCAACAACGCCAATTTCCTAGACAATGACCAGTGGCTGAGCAC
TGTCTCCCAGTATGACCGTGACAAGTACTGGAACCGCTTCCGAGATGAAGTTGAGGATGACTATTTCAGA
AACTGGAATCCCAACAAGCCCTTCGACCAAGCCCTGGACCCATCCAAGGACCCCTGCCTGAAGGTGAAAT
GCAGCCCGCACAAAGTATGTGTGACCCAGGACTACCAGACGGCTCTGTGTGTCAGCCGCAAGCACCTGTT
GCCCAGGCAGAAGAAGGGCAATGTGGCTCACAAACACTGGCTTGGACCTTCCAATCTGGTTAAGTGCAAG
CCTTGCCCCGTGGCGCAGTCAGCGATGGTCTGCGGCTCTGACGGCCACACGTACACGTCCAAGTGCAAGT
TGGAATTCCACGCTTGTTCTACAGGCAAAAGCCTCAACTCCCTCTGTGATGGGCCCTGTCCGTGTCTGCC
TGAGCCTGAGCCACTGAAGCCCAAAGCAGAGAAGAGTGCCTGCACGGACAAGGAGCTGCGGAACCTCGCC
TCCCGGCTGAAGGACTGGTTCGGGGCTCTTCATGAGGACGCCAATAGAGTCATCAAGCCTACCAGCTCTG
ATCCAGCCCAAGGCAGGTTTGACACCAGCATCTTACCCATTTGCAAGGACTCCTTGGGTTGGATGTTCAA
CAAGTTGGACATGAACTATGACCTGTTGCTGGACCACTCAGAGATCAATGCCATCTACCTAGACAAATAT
GAGCCCTGCATCAAGCCTCTCTTCAACTCGTGCGACTCCTTCAAGGACGGCAAACTCTCCAACAATGAGT
GGTGTTACTGCTTCCAGAAGCCAGCGGGTCTCCCTTGCCAGAATGAAATGAACAGAATTCAGAAGCTAAG
CAAGGGGAAAAGCCTACTGGGGGCCTTCATCCCTCGATGTAACGAGGAGGGCTACTACAAAGCCACACAG
TGCCACGGCAGCACGGGGCAGTGCTGGTGTGTGGATAAATATGGGAACGAGCTGGCCGGCTCCAGGAAAC
AGGGCACTGTAAGCTGCGAAGAGGAGCAGGAAACCTCCGGGGACTTCGGCAGTGGAGGCTCCGTGGTCCT
GCTGGATGACCTAGAGGATGAGCGGGAGCTGGGACCAAAGGACAAAGAAGGGAAGCTGAGGGTGCGCACC
CGGGCCGTGCGGGAAGATGATGAGGATGAAGATGACGACAAAGAAGATGAGGTCGGGTACATATGGTAG

Translation (442 aa):
MPAIAVLAAAAAAWCFLQVDSRHLDALAGGAALNNANFLDNDQWLSTVSQYDRDKYWNRFRDEVEDDYFR
NWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLGPSNLVKCK
PCPVAQSAMVCGSDGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLA
SRLKDWFGALHEDANRVIKPTSSDPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKY
EPCIKPLFNSCDSFKDGKLSNNEWCYCFQKPAGLPCQNEMNRIQKLSKGKSLLGAFIPRCNEEGYYKATQ
CHGSTGQCWCVDKYGNELAGSRKQGTVSCEEEQETSGDFGSGGSVVLLDDLEDERELGPKDKEGKLRVRT
RAVREDDEDEDDDKEDEVGYIW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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