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Report for CCDS1873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1873.1 Public Homo sapiens 2 OTX1 24 110 108 CCDS HistoryNCBI Gene:5013Re-query CCDS DB by CCDS ID:1873.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1873.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282549.7 ENSP00000282549.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000282549.7Link to Ensembl Protein Viewer:ENSP00000282549.2Re-query CCDS DB by Nucleotide ID:ENST00000282549Re-query CCDS DB by Protein ID:ENSP00000282549
Original member Current member EBI ENST00000366671.7 ENSP00000355631.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366671.7Link to Ensembl Protein Viewer:ENSP00000355631.3Re-query CCDS DB by Nucleotide ID:ENST00000366671Re-query CCDS DB by Protein ID:ENSP00000355631
Original member Current member NCBI NM_001199770.2 NP_001186699.1 Accepted alive Link to Nucleotide Sequence:NM_001199770.2Link to Protein Sequence:NP_001186699.1Re-query CCDS DB by Nucleotide ID:NM_001199770Re-query CCDS DB by Protein ID:NP_001186699Link to BLAST:NP_001186699.1
Original member Current member NCBI NM_014562.4 NP_055377.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014562.4Link to Protein Sequence:NP_055377.1Re-query CCDS DB by Nucleotide ID:NM_014562Re-query CCDS DB by Protein ID:NP_055377Link to BLAST:NP_055377.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186699.1 354 P32242 354 100% 0 0
NP_055377.1 354 P32242 354 100% 0 0

Chromosomal Locations for CCDS 1873.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 63052991 63053087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63054047 63054198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63055501 63056316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGATGTCTTACCTCAAACAACCCCCATACGGCATGAACGGGCTGGGCCTGGCCGGGCCCGCCATGGACC
TCCTGCACCCATCCGTGGGCTATCCGGCCACTCCGCGGAAGCAGCGGCGGGAGCGCACCACCTTCACGCG
TTCACAGCTGGACGTGCTCGAGGCGCTCTTCGCCAAGACTCGCTACCCTGACATCTTCATGCGGGAGGAG
GTGGCGCTCAAGATCAACCTGCCGGAGTCTAGAGTCCAGGTCTGGTTCAAGAACCGCCGCGCCAAATGCC
GCCAGCAGCAGCAGAGCGGGAGCGGAACCAAGAGCCGCCCAGCCAAGAAGAAGTCCTCTCCAGTGCGGGA
GAGCTCGGGCTCCGAAAGCAGTGGCCAATTCACGCCGCCAGCTGTGTCCAGCTCTGCCTCGTCCTCTAGC
TCGGCGTCCAGCTCTTCCGCCAACCCAGCGGCTGCAGCGGCTGCGGGACTAGGTGGGAACCCGGTGGCGG
CCGCGTCGTCGCTGAGTACACCAGCTGCCTCATCTATCTGGAGCCCGGCCTCCATCTCGCCAGGCTCAGC
GCCCGCGTCCGTGTCGGTGCCGGAGCCATTGGCCGCGCCTAGCAACACCTCGTGTATGCAGCGCTCCGTA
GCTGCAGGCGCCGCCACCGCAGCAGCCTCTTATCCCATGTCCTACGGCCAGGGCGGCAGCTACGGCCAAG
GCTACCCTACGCCCTCCTCTTCCTACTTTGGCGGCGTGGACTGCAGCTCATACCTAGCGCCCATGCACTC
ACATCACCACCCGCACCAGCTCAGCCCCATGGCACCCTCCTCCATGGCGGGCCACCATCATCACCACCCA
CATGCGCACCACCCGTTGAGCCAGTCCTCAGGCCACCACCACCACCATCACCACCACCACCACCAAGGCT
ACGGTGGCTCTGGGCTTGCCTTCAACTCTGCCGACTGCTTGGATTACAAGGAGCCTGGCGCCGCTGCTGC
TTCCTCCGCCTGGAAACTCAACTTCAACTCCCCCGACTGTCTGGACTATAAGGACCAAGCCTCATGGCGG
TTCCAGGTCTTGTGA

Translation (354 aa):
MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREE
VALKINLPESRVQVWFKNRRAKCRQQQQSGSGTKSRPAKKKSSPVRESSGSESSGQFTPPAVSSSASSSS
SASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWSPASISPGSAPASVSVPEPLAAPSNTSCMQRSV
AAGAATAAASYPMSYGQGGSYGQGYPTPSSSYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHP
HAHHPLSQSSGHHHHHHHHHHQGYGGSGLAFNSADCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQASWR
FQVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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