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Report for CCDS326.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
326.1 Public Homo sapiens 1 TAF12 24 110 108 CCDS HistoryNCBI Gene:6883Re-query CCDS DB by CCDS ID:326.1Re-query CCDS DB by GeneID:6883See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 326.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263974.4 ENSP00000263974.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000263974.4Link to Ensembl Protein Viewer:ENSP00000263974.4Re-query CCDS DB by Nucleotide ID:ENST00000263974Re-query CCDS DB by Protein ID:ENSP00000263974
Original member Current member EBI ENST00000373824.9 ENSP00000362930.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373824.9Link to Ensembl Protein Viewer:ENSP00000362930.4Re-query CCDS DB by Nucleotide ID:ENST00000373824Re-query CCDS DB by Protein ID:ENSP00000362930
Original member Current member EBI ENST00000692098.1 ENSP00000509051.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000692098.1Link to Ensembl Protein Viewer:ENSP00000509051.1Re-query CCDS DB by Nucleotide ID:ENST00000692098Re-query CCDS DB by Protein ID:ENSP00000509051
Original member Current member EBI ENST00000685312.1 ENSP00000509153.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000685312.1Link to Ensembl Protein Viewer:ENSP00000509153.1Re-query CCDS DB by Nucleotide ID:ENST00000685312Re-query CCDS DB by Protein ID:ENSP00000509153
Original member Current member EBI ENST00000689843.1 ENSP00000509370.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689843.1Link to Ensembl Protein Viewer:ENSP00000509370.1Re-query CCDS DB by Nucleotide ID:ENST00000689843Re-query CCDS DB by Protein ID:ENSP00000509370
Original member Current member NCBI NM_001135218.2 NP_001128690.1 Accepted alive Link to Nucleotide Sequence:NM_001135218.2Link to Protein Sequence:NP_001128690.1Re-query CCDS DB by Nucleotide ID:NM_001135218Re-query CCDS DB by Protein ID:NP_001128690Link to BLAST:NP_001128690.1
Original member Current member NCBI NM_005644.4 NP_005635.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005644.4Link to Protein Sequence:NP_005635.1Re-query CCDS DB by Nucleotide ID:NM_005644Re-query CCDS DB by Protein ID:NP_005635Link to BLAST:NP_005635.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128690.1 161 Q16514-1 161 100% 0 0
NP_005635.1 161 Q16514-1 161 100% 0 0

Chromosomal Locations for CCDS 326.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 28603539 28603574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28605372 28605460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28613247 28613361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28617953 28618030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28621914 28622081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGAACCAGTTTGGCCCCTCAGCCCTAATCAACCTCTCCAATTTCTCATCCATAAAACCGGAACCAGCCA
GCACCCCTCCACAAGGCTCCATGGCCAATAGTACTGCAGTGGTAAAGATACCAGGCACTCCTGGGGCAGG
AGGTCGTCTTAGCCCTGAAAACAATCAGGTATTGACCAAGAAGAAATTACAGGACTTAGTAAGAGAAGTG
GATCCTAATGAGCAGTTGGATGAAGATGTGGAGGAGATGCTGCTGCAGATTGCTGATGATTTTATCGAGA
GTGTGGTGACAGCAGCCTGTCAGCTTGCGCGGCATCGCAAGTCTAGCACCCTGGAGGTGAAAGATGTCCA
GCTGCATTTAGAGCGCCAGTGGAACATGTGGATCCCAGGATTTGGCTCTGAAGAAATCCGACCCTACAAA
AAAGCTTGCACCACAGAAGCTCACAAACAGAGAATGGCATTGATCCGGAAAACAACCAAGAAATAA

Translation (161 aa):
MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREV
DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYK
KACTTEAHKQRMALIRKTTKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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