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Report for CCDS40281.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40281.1 Public Mus musculus 8 Defa24 23 108 98 CCDS HistoryNCBI Gene:503491Re-query CCDS DB by CCDS ID:40281.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40281.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080533.5 ENSMUSP00000079376.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080533.5Link to Ensembl Protein Viewer:ENSMUSP00000079376.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080533Re-query CCDS DB by Protein ID:ENSMUSP00000079376
Original member Current member NCBI NM_001024225.2 NP_001019396.1 Accepted alive Link to Nucleotide Sequence:NM_001024225.2Link to Protein Sequence:NP_001019396.1Re-query CCDS DB by Nucleotide ID:NM_001024225Re-query CCDS DB by Protein ID:NP_001019396Link to BLAST:NP_001019396.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019396.1 93 Q5G865 93 100% 0 0

Chromosomal Locations for CCDS 40281.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 21734537 21734708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21735268 21735377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (282 nt):
ATGAAGACACTAATCCTCCTCTCTGCCCTCGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAA
ATACAGATGAAGAGACTAAAACTGAGGAGCAGCCAGGGGAAGAGGACCAGGCTGTGTCTGTCTCTTTTGG
AGACCCAGAAGGCGCTTCTCTTCAAGAGGAATCATTGAGAGATCTGGTATGCTATTGTAGAGCAAGAGGC
TGCAAAGGAAGAGAACGCATGAATGGGACCTGCAGTAAGGGTCATTTATTGTACATGCTCTGCTGTCGCT
GA

Translation (93 aa):
MKTLILLSALVLLAFQVQADPIQNTDEETKTEEQPGEEDQAVSVSFGDPEGASLQEESLRDLVCYCRARG
CKGRERMNGTCSKGHLLYMLCCR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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