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Report for CCDS28554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28554.1 Public Mus musculus 17 Atp6v0e 23 108 98 CCDS HistoryNCBI Gene:11974Re-query CCDS DB by CCDS ID:28554.1Re-query CCDS DB by GeneID:11974See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28554.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015719.15 ENSMUSP00000015719.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015719.15Link to Ensembl Protein Viewer:ENSMUSP00000015719.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000015719Re-query CCDS DB by Protein ID:ENSMUSP00000015719
Original member Current member EBI ENSMUST00000167352.1 ENSMUSP00000127552.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167352.1Link to Ensembl Protein Viewer:ENSMUSP00000127552.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167352Re-query CCDS DB by Protein ID:ENSMUSP00000127552
Original member Current member NCBI NM_025272.2 NP_079548.1 Accepted alive Link to Nucleotide Sequence:NM_025272.2Link to Protein Sequence:NP_079548.1Re-query CCDS DB by Nucleotide ID:NM_025272Re-query CCDS DB by Protein ID:NP_079548Link to BLAST:NP_079548.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079548.1 81 Q9CQD8 81 100% 0 0

Chromosomal Locations for CCDS 28554.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 26676475 26676578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26682678 26682725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26695355 26695448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (246 nt):
ATGGCATACCACGGCCTTACTGTGCCTTTGATCGTGATGAGCGTGTTCTGGGGCTTCGTGGGCCTCCTCG
TGCCCTGGTTTATCCCCAAGGGTCCTAACCGGGGAGTTATCATCACCATGTTGGTGACTTGTTCAGTTTG
CTGCTATCTCTTTTGGCTGATTGCAATTCTGGCACAGCTCAATCCTCTGTTTGGACCACAGTTGAAAAAT
GAAACCATCTGGTATCTGAAGTACCACTGGCCTTGA

Translation (81 aa):
MAYHGLTVPLIVMSVFWGFVGLLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQLNPLFGPQLKN
ETIWYLKYHWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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