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Report for CCDS20492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20492.1 Public Mus musculus 6 Klrg1 23 108 98 CCDS HistoryNCBI Gene:50928Re-query CCDS DB by CCDS ID:20492.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20492.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032207.8 ENSMUSP00000032207.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032207.8Link to Ensembl Protein Viewer:ENSMUSP00000032207.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032207Re-query CCDS DB by Protein ID:ENSMUSP00000032207
Original member Current member NCBI NM_016970.1 NP_058666.1 Accepted alive Link to Nucleotide Sequence:NM_016970.1Link to Protein Sequence:NP_058666.1Re-query CCDS DB by Nucleotide ID:NM_016970Re-query CCDS DB by Protein ID:NP_058666Link to BLAST:NP_058666.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058666.1 188 O88713 188 100% 0 0

Chromosomal Locations for CCDS 20492.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 122271372 122271483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122273536 122273633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122278115 122278284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122279639 122279743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122282730 122282811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGGCTGACAGCTCTATCTATTCAACACTAGAGCTGCCGGAGGCACCTCAAGTCCAAGATGAGTCCAGAT
GGAAGCTCAAAGCTGTCTTACACCGGCCCCATCTTTCCCGCTTTGCAATGGTGGCTTTGGGGCTTTTGAC
TGTGATTCTCATGAGTCTACTGATGTATCAACGGATCCTGTGCTGCGGCTCCAAGGACTCTACATGTTCC
CACTGCCCCAGCTGCCCCATCCTCTGGACGAGGAATGGTAGCCACTGTTACTATTTTTCAATGGAGAAAA
AGGACTGGAATTCTAGTCTGAAATTCTGTGCAGACAAAGGCTCACATCTCCTTACATTTCCGGACAACCA
GGGAGTGAAGCTGTTTGGAGAGTACCTGGGTCAGGACTTTTACTGGATCGGCTTGAGGAACATTGATGGC
TGGAGGTGGGAAGGCGGCCCAGCGCTCAGCTTGAGGATTCTTACCAACAGCTTGATACAGAGGTGCGGTG
CCATTCACAGAAATGGCCTCCAAGCCTCCAGTTGTGAAGTTGCTTTGCAGTGGATCTGTAAGAAGGTCCT
ATACTGA

Translation (188 aa):
MADSSIYSTLELPEAPQVQDESRWKLKAVLHRPHLSRFAMVALGLLTVILMSLLMYQRILCCGSKDSTCS
HCPSCPILWTRNGSHCYYFSMEKKDWNSSLKFCADKGSHLLTFPDNQGVKLFGEYLGQDFYWIGLRNIDG
WRWEGGPALSLRILTNSLIQRCGAIHRNGLQASSCEVALQWICKKVLY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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