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Report for CCDS40670.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40670.1 Public Mus musculus 9 Pdcd7 23 108 98 CCDS HistoryNCBI Gene:50996Re-query CCDS DB by CCDS ID:40670.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40670.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048184.3 ENSMUSP00000035515.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048184.3Link to Ensembl Protein Viewer:ENSMUSP00000035515.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000048184Re-query CCDS DB by Protein ID:ENSMUSP00000035515
Original member Current member NCBI NM_016688.2 NP_057897.2 Accepted alive Link to Nucleotide Sequence:NM_016688.2Link to Protein Sequence:NP_057897.2Re-query CCDS DB by Nucleotide ID:NM_016688Re-query CCDS DB by Protein ID:NP_057897Link to BLAST:NP_057897.2

Chromosomal Locations for CCDS 40670.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 65346142 65347008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65354610 65354748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65356245 65356481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65356718 65356805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65358594 65358717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGGCTCTGCCACCTTTTTTCGCCCAGAGCCGTCAGGGACCTCCCCCTCCGCAGCCACCGCCTTCCGCTC
CATTCGGCTGTCCGCCCCCGCCGCTGCCCTCTCCGGCTTTCCCGCCGCCCCTTCCCCAGCGACCCGGCCC
CTTCCCGGGGGCTTCCGCCCCCTTCCTCCAGCCTCCGCTGGCCCTGCAGCCCCGCGCGCCAGCCGAGGCC
TCCCGCGGCGGTGGCGGTGGCGGCGCCTTCTTCCCGGTGCCACCCCCACCGCTGCCGCCGCCGCCGCCGC
AGTGCCGGCCCTTCCCGGGGCCCGACGCCGTCGAGCGTCCACGGCCACCGCCTCCAGGTCCCGGGCCGCC
CTGGAGCCCGCGCTGGGCGGAGGCGCCGCCGCCGCCCGACGTGCTCGGAGACGCGGCCCTGCAGCGCCTG
CGTGATCGGCAGTGGCTGGAGGCGGTGTTCGGGAACCCCCGGCGGCCCGGTGGCCTCCGGACCCCGCGCA
CACCCGCCGGGCCCAGCCTGGGTGAAGTCCGCGCGCGGTTGCGTTCCGCTTTGCGTTTGGTGCGGCGGCT
ACGCAGCTTGGGGCAGTCCCTGCGCGAGGCTGAGGCCGACGGAGCAGCCTGGGCCTCCCTGCACGCTCAG
GCGGCGCCACTACGAGCGGAGCTAGCGGAGCGGCTGCAGCCGCTGGCCCAGGCCGCCTATGTGGGCGAGG
CGCGACGGAGGCTGGAGAGGGTCCGGCGCCGCCGGCTGCGGCTTCGTGAGAGGGCCCGGGATCGGGAGGC
TGAGCGGGAGGCGGAGGCCGCGCAGGCCACGGAACGGGAGCAGGAGATTGACCGCTGGAGGGTGAAGTGC
GTGCAGGAAGTGGAGGAAAAGAAGCGGGAGCAGGAACTCAAAGCAGCTGCTGATGGGGTCTTAGCTGAAG
TAAGGAAAAAGCAATCAGACACCAAAAGGATGGTGGACATTCTGCGTGCTTTAGAGAAGCTGAGGAAACT
GAGGAAAGAAGCTGCAGCAAGGAAAGGGGTCTGTCCTCCTGCTTCAGCGGATGAGACTTTCGAGCACCAT
CTTCAGCGGCTGAGAAAGCTCATTAAAAAGCGCTCTGAACTGTATGAAGCTGAAGAGAGAGCCCTCCGAG
TTATGCTAGAAGGAGAGCAGGAGGAGGAGAGGAGACGAGAACTGGAAAAGAAACAGAGAAAAGAGAAAGA
GAAACTTCTACTACAGAAACGGGAAATTGAGTCCAAGTTATTCGGGGATCCAGATGAGTTCCCACTTGCT
CACCTCCTGCAGCCATTCCGGCAGTATTACCTCCAGGCTGAGCACTCCTTGCCCGCGCTCATTCAGATAA
GGCATGATTGGGATCAGTACCTGGTACCATCTGATCATCCGAAAGGCAACTCGGTTCCCCAAGGATGGGT
CCTTCCTCCGCTCCCCAGCAACGACATCTGGGCAACGGCCATTCAGCTGCATTAA

Translation (484 aa):
MALPPFFAQSRQGPPPPQPPPSAPFGCPPPPLPSPAFPPPLPQRPGPFPGASAPFLQPPLALQPRAPAEA
SRGGGGGGAFFPVPPPPLPPPPPQCRPFPGPDAVERPRPPPPGPGPPWSPRWAEAPPPPDVLGDAALQRL
RDRQWLEAVFGNPRRPGGLRTPRTPAGPSLGEVRARLRSALRLVRRLRSLGQSLREAEADGAAWASLHAQ
AAPLRAELAERLQPLAQAAYVGEARRRLERVRRRRLRLRERARDREAEREAEAAQATEREQEIDRWRVKC
VQEVEEKKREQELKAAADGVLAEVRKKQSDTKRMVDILRALEKLRKLRKEAAARKGVCPPASADETFEHH
LQRLRKLIKKRSELYEAEERALRVMLEGEQEEERRRELEKKQRKEKEKLLLQKREIESKLFGDPDEFPLA
HLLQPFRQYYLQAEHSLPALIQIRHDWDQYLVPSDHPKGNSVPQGWVLPPLPSNDIWATAIQLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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