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Report for CCDS23717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23717.1 Public Mus musculus 10 Il22ra2 23 108 98 CCDS HistoryNCBI Gene:237310Re-query CCDS DB by CCDS ID:23717.1Re-query CCDS DB by GeneID:237310See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23717.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036564.7 ENSMUSP00000042642.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036564.7Link to Ensembl Protein Viewer:ENSMUSP00000042642.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000036564Re-query CCDS DB by Protein ID:ENSMUSP00000042642
Original member Current member NCBI NM_178258.5 NP_839989.2 Accepted alive Link to Nucleotide Sequence:NM_178258.5Link to Protein Sequence:NP_839989.2Re-query CCDS DB by Nucleotide ID:NM_178258Re-query CCDS DB by Protein ID:NP_839989Link to BLAST:NP_839989.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_839989.2 230 Q80XF5 230 100% 0 0

Chromosomal Locations for CCDS 23717.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 19622040 19622097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 19624401 19624536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 19626629 19626807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 19631614 19631783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 19632769 19632918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGATGCCTAAGCATTGCCTTCTAGGTCTCCTCATCATACTCTTGAGCAGTGCAACAGAAATACAACCAG
CTCGTGTATCTCTGACGCCCCAGAAGGTCCGATTTCAGTCCAGAAATTTCCACAATATTTTGCACTGGCA
AGCAGGGAGCTCTCTCCCCAGCAACAACAGCATCTACTTTGTGCAGTACAAGATGTATGGACAGAGCCAA
TGGGAAGATAAAGTTGACTGCTGGGGGACCACGGCGCTCTTCTGTGACCTGACCAATGAAACCTTAGACC
CATACGAGCTGTATTACGGGAGGGTGATGACGGCCTGTGCTGGACGCCACTCTGCCTGGACCAGGACACC
CCGCTTCACTCCATGGTGGGAAACAAAACTAGATCCTCCGGTCGTGACTATAACCCGAGTTAACGCATCT
TTGCGGGTGCTTCTCCGTCCTCCAGAGTTGCCAAATAGAAACCAAAGTGGAAAAAATGCATCCATGGAAA
CTTACTACGGCTTAGTATACAGAGTTTTCACAATCAACAATTCACTAGAGAAGGAGCAAAAAGCCTATGA
AGGAACTCAGAGAGCTGTTGAAATTGAAGGTCTGATACCTCATTCCAGCTACTGCGTAGTGGCTGAAATG
TACCAGCCCATGTTTGACAGAAGAAGCCCAAGAAGCAAGGAGAGATGTGTGCACATTCCATGA

Translation (230 aa):
MMPKHCLLGLLIILLSSATEIQPARVSLTPQKVRFQSRNFHNILHWQAGSSLPSNNSIYFVQYKMYGQSQ
WEDKVDCWGTTALFCDLTNETLDPYELYYGRVMTACAGRHSAWTRTPRFTPWWETKLDPPVVTITRVNAS
LRVLLRPPELPNRNQSGKNASMETYYGLVYRVFTINNSLEKEQKAYEGTQRAVEIEGLIPHSSYCVVAEM
YQPMFDRRSPRSKERCVHIP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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