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Report for CCDS37210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37210.1 Public Mus musculus 15 Higd1c 23 108 98 CCDS HistoryNCBI Gene:380975Re-query CCDS DB by CCDS ID:37210.1Re-query CCDS DB by GeneID:380975See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37210.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177211.1 ENSMUSP00000134848.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177211.1Link to Ensembl Protein Viewer:ENSMUSP00000134848.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177211Re-query CCDS DB by Protein ID:ENSMUSP00000134848
Original member Current member EBI ENSMUST00000175683.7 ENSMUSP00000134927.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175683.7Link to Ensembl Protein Viewer:ENSMUSP00000134927.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000175683Re-query CCDS DB by Protein ID:ENSMUSP00000134927
Original member Current member NCBI NM_001002900.1 NP_001002900.1 Accepted alive Link to Nucleotide Sequence:NM_001002900.1Link to Protein Sequence:NP_001002900.1Re-query CCDS DB by Nucleotide ID:NM_001002900Re-query CCDS DB by Protein ID:NP_001002900Link to BLAST:NP_001002900.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002900.1 96 Q76I25 96 100% 0 0

Chromosomal Locations for CCDS 37210.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 100365270 100365360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100374879 100375013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100383727 100383791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (291 nt):
ATGTCTTCAGATGAGTGGTCAGCAGCTGAGGATGAAGGCCAGCTGTCCCGACTCCTCCGGAAATCGAGAG
ACTCCCCCTTTGTCCCCGTGGGCATGGCAGGCTTTGTGGCTGTGCTGTCCTACGGTCTTTACAAGCTAAA
TTCCAGAAGAGAGCAGAAGATGTCCCTTCATCTCATCCACGTGCGGGTTGCCGCCCAAGGATGTGTGGTG
GGAGCCGTGACTCTAGGTGTTCTCTACTCTATGTATAAGGACTATATCAGACCTCGGTTCTTCAATGTAC
CCAAAAAGTAA

Translation (96 aa):
MSSDEWSAAEDEGQLSRLLRKSRDSPFVPVGMAGFVAVLSYGLYKLNSRREQKMSLHLIHVRVAAQGCVV
GAVTLGVLYSMYKDYIRPRFFNVPKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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