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Report for CCDS29875.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29875.1 Public Mus musculus 19 Psd 23 108 98 CCDS HistoryNCBI Gene:73728Re-query CCDS DB by CCDS ID:29875.1Re-query CCDS DB by GeneID:73728See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29875.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041391.4 ENSMUSP00000039728.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041391.4Link to Ensembl Protein Viewer:ENSMUSP00000039728.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000041391Re-query CCDS DB by Protein ID:ENSMUSP00000039728
Original member Current member NCBI NM_028627.2 NP_082903.2 Accepted alive Link to Nucleotide Sequence:NM_028627.2Link to Protein Sequence:NP_082903.2Re-query CCDS DB by Nucleotide ID:NM_028627Re-query CCDS DB by Protein ID:NP_082903Link to BLAST:NP_082903.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082903.2 1024 Q5DTT2-1 1024 100% 0 0

Chromosomal Locations for CCDS 29875.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46312699 46312929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46313302 46313445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46313654 46313798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46314176 46314333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46314463 46314533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46314613 46314803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46316033 46316076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46319474 46319563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46319658 46319716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46320251 46320363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46320527 46320607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46320769 46320963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46322056 46322496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46323128 46323482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46323914 46324016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46324276 46324929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3075 nt):
ATGGCCCAGGGTGCCATGCGCTTCTGCTCAGAAGGCGACTGTGCCATCTCCCCACCACGATGTCCTCGTC
GCTGGCTCCCCGAAGGCCCAGTGCCCCAAAGTCCCCCAGCCAGCATGTATGGCAGCACAGGATCCCTTAT
ACGACGAGTGGTGGGCCCAGGTCCTCGAGGCCGGGATCTGGGACGTGTGACAGCACCTTGTACCCCTCTG
CGAGCCCCTCCCTCACCCCATATAGCTCCCTCACCCTGGGGACCCTCTTCACCCACTGGGCAGCCTCCAC
CAGGGGCACAGAGTTCTGTGGTCATCTTCCGTTTTGTGGAGAAGGCCAGTGTGAGGCCACTGAATGGCCT
ACCTGCTTCTGGAGGCCTGAGTCGGAGCTGGGACCTGGGCGGGATTTCTGCCCCCAGGCCCACCCCAGCC
CTTGGACCTGGCTGCAACCGGAAGTTGCGGCTAGAGGCATCCACATCAGACCCACTCCCAGCTGGAGGAG
GCTCTGTTCTTCCTGGCAGCAGGGACCCCTCACGTGGACCATTGGTCCCACCCCAGATCGGGGCAGATGG
GCTTTACTCCTCCCTCCCCAATGGGCTGGGGGGGACCCCTGAGCACCTGGCCATGCACTTCCGAGGACCT
GCAGACACCGGATTCCTAAACCAGGGGGACACCTGGTCCTCCCCCCGGGAAGTCTCCTCTCATGCCCAGA
GAATCGCTCGAGCCAAGTGGGAATTCTTCTATGGCTCCTTGGACGCCCCCAGCTCAGGTGCTAAGCCCCC
AGAGCAGGTCCTCCCATCACGTGGGGTGGGCTCCAAGCAAGGCTCTGGGGTGGCTGTGGGGCGAGCAGCC
AAGTACTCCGAGACAGACCTGGACAAGGTGCCCCTGAGGTGCTACCGAGAGACTGACATCGATGAGGTGC
TGGCTGAGCGGGAGGAGGCCGACTCTGCCATTGAGAGTCAGCCCAGCTCTGAGGGCCCCCATGGCACTGC
CCAACCACCTGCCTCACGACCTAGCCCATGCCCTGGCCCTTCTTCCAGTCTGGGCAGTGGCAACGAAGAT
GATGAGGCAGGAGGTGAAGAGGATGTGGATGATGAGGTGTTCGAGGCCTCGGAGGGGGCCCGGCCAGGGG
ACCACATGCCTCACTCTGGGCTTCTCAAGTCACCAGTACCCTTCCTGCTTGGGACCAGCCCCTCAGCGGA
TGGGCCTGACTCCTTCAGTTGTGTGTTTGAAGCTATCTTGGAGTCACACCGGGCCAAGGGCACCTCCTAT
AGTAGCCTTGCCTCCCTGGAGGCACTGGCCTCACCTGGCCCAACCCAGAGCCCCTTCTTCACCTTTGAGA
TGCCTCCCCAGCCCCCAGCTCCCAGGCCTGACCCACCTGCACCTGCCCCACTTGCCCCTCTTGAACCTGA
TTCTGGCACCAGCTCTGCTGCTGATGGTCCTTGGACCCAGAGAAGGGAGGTGGAAGAGTCAGATGCTGGG
GCCACGCTGGCCCCAAGGAAGGAGCTTCCTAGTCCCTCCCACTCTGAGGATAGCTTTGGGCTGGGGGCAG
CACCCCTAGGCAGTGAACCACCCCTAAGTCAGCTGGTATCCGACTCAGACTCAGAGCTGGACAGCACAGA
GCGGCTGGCCCTGGGAAGCACAGACACCTTGTCCAATGGACAGAAAGCAGATTTGGAGGCTGCACAGCGC
CTAGCCAAGAGGCTATACCGACTCGATGGCTTCAGGAAGGCCGATGTGGCACGGCATCTGGGCAAGAACA
ATGACTTCAGCAAATTGGTGGCTGGCGAGTATCTGAAGTTTTTTGTCTTCACGGGCATGACTCTGGACCA
AGCTCTCAGGGTATTTCTAAAGGAGCTGGCCTTAATGGGTGAGACCCAGGAGCGGGAGCGTGTACTGGCC
CACTTCTCCCAGCGATATTTCCAGTGTAATCCTGAAGCCCTGTCCTCAGAGGACGGTGCTCACACGCTGA
CCTGTGCCCTCATGCTCCTCAACACAGATCTCCATGGCCATAACATTGGGAAGCGCATGACCTGTGGGGA
CTTCATCGGAAACCTGGAGGGCCTCAATGATGGTGGCGACTTCCCCAGGGAGCTGCTCAAGGCCTTGTAC
AGCTCCATCAAGAATGAAAAATTGCAATGGGCCATAGACGAGGAGGAGCTGCGACGGTCTCTGTCCGAGT
TGGCCGATCCTAACCCCAAGGTCATCAAGCGGGTCAGCGGAGGCAGTGGCAGCAGTTCCAGCCCCTTCCT
GGACCTGACTCCTGAGCCCGGGGCAGCTGTCTACAAGCACGGGGCCCTGGTGCGAAAGGTGCACGCAGAC
CCTGACTGCAGGAAGACACCTCGTGGCAAGCGGGGCTGGAAGAGCTTCCACGGGATCCTCAAGGGCATGA
TCCTCTACCTGCAGAAGGAGGAGTATCAGCCTGGGAAGGCTCTTTCCGAGGCAGAGCTGAAGAATGCTAT
CAGCATCCACCACGCCCTGGCTACCCGCGCCAGCGATTATAGCAAGAGACCACACGTCTTCTACCTGCGC
ACAGCTGACTGGCGGGTCTTCCTCTTCCAGGCTCCGAGCCTGGAGCAAATGCAGTCCTGGATCACTCGCA
TCAATGTGGTGGCTGCCATGTTTTCTGCACCCCCCTTCCCAGCTGCTGTTAGCTCCCAGAAGAAATTCAG
CCGCCCTCTGCTGCCCAGTGCTGCCACCCGCCTCTCCCAGGAGGAGCAGGTGAGGACCCATGAGGCCAAG
CTGAAGGCCATGGCCAGCGAGCTGAGAGAGCACCGGGCTGCACATCTGGGAAAGAAGGCCCGAGGCAAGG
AGGCGGATGAGCAGCGGCAGAAGGAGGCCTACCTGGAGTTTGAGAAATCCCGCTACGGCACCTATGCAGC
ACTGCTTCGAGTCAAGATGAAGGCAGCCAGCGAGGAGCTGGACACCATAGAGGCAGCCCTGGCCCAGGCT
GGGAGCACGGAGGATGGATGCCCTCCGCCTCACTCCAGTCCTTCCCTGCGGCCCAAGCCCACCAGCCAGC
CCCGGGCTCAGCGTCCTGGCTCAGAAACCCGGGCTGGAGCAGGCAGTACAAGGCCAAAGCCCTGA

Translation (1024 aa):
MAQGAMRFCSEGDCAISPPRCPRRWLPEGPVPQSPPASMYGSTGSLIRRVVGPGPRGRDLGRVTAPCTPL
RAPPSPHIAPSPWGPSSPTGQPPPGAQSSVVIFRFVEKASVRPLNGLPASGGLSRSWDLGGISAPRPTPA
LGPGCNRKLRLEASTSDPLPAGGGSVLPGSRDPSRGPLVPPQIGADGLYSSLPNGLGGTPEHLAMHFRGP
ADTGFLNQGDTWSSPREVSSHAQRIARAKWEFFYGSLDAPSSGAKPPEQVLPSRGVGSKQGSGVAVGRAA
KYSETDLDKVPLRCYRETDIDEVLAEREEADSAIESQPSSEGPHGTAQPPASRPSPCPGPSSSLGSGNED
DEAGGEEDVDDEVFEASEGARPGDHMPHSGLLKSPVPFLLGTSPSADGPDSFSCVFEAILESHRAKGTSY
SSLASLEALASPGPTQSPFFTFEMPPQPPAPRPDPPAPAPLAPLEPDSGTSSAADGPWTQRREVEESDAG
ATLAPRKELPSPSHSEDSFGLGAAPLGSEPPLSQLVSDSDSELDSTERLALGSTDTLSNGQKADLEAAQR
LAKRLYRLDGFRKADVARHLGKNNDFSKLVAGEYLKFFVFTGMTLDQALRVFLKELALMGETQERERVLA
HFSQRYFQCNPEALSSEDGAHTLTCALMLLNTDLHGHNIGKRMTCGDFIGNLEGLNDGGDFPRELLKALY
SSIKNEKLQWAIDEEELRRSLSELADPNPKVIKRVSGGSGSSSSPFLDLTPEPGAAVYKHGALVRKVHAD
PDCRKTPRGKRGWKSFHGILKGMILYLQKEEYQPGKALSEAELKNAISIHHALATRASDYSKRPHVFYLR
TADWRVFLFQAPSLEQMQSWITRINVVAAMFSAPPFPAAVSSQKKFSRPLLPSAATRLSQEEQVRTHEAK
LKAMASELREHRAAHLGKKARGKEADEQRQKEAYLEFEKSRYGTYAALLRVKMKAASEELDTIEAALAQA
GSTEDGCPPPHSSPSLRPKPTSQPRAQRPGSETRAGAGSTRPKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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