NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13117.1 Public Homo sapiens 20 ESF1 24 110 108 CCDS HistoryNCBI Gene:51575Re-query CCDS DB by CCDS ID:13117.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13117.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000202816.5 ENSP00000202816.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000202816.5Link to Ensembl Protein Viewer:ENSP00000202816.1Re-query CCDS DB by Nucleotide ID:ENST00000202816Re-query CCDS DB by Protein ID:ENSP00000202816
Original member Current member EBI ENST00000617257.2 ENSP00000480783.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000617257.2Link to Ensembl Protein Viewer:ENSP00000480783.2Re-query CCDS DB by Nucleotide ID:ENST00000617257Re-query CCDS DB by Protein ID:ENSP00000480783
Original member Current member NCBI NM_001276380.2 NP_001263309.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001276380.2Link to Protein Sequence:NP_001263309.1Re-query CCDS DB by Nucleotide ID:NM_001276380Re-query CCDS DB by Protein ID:NP_001263309Link to BLAST:NP_001263309.1
Original member Current member NCBI NM_016649.4 NP_057733.2 Accepted alive Link to Nucleotide Sequence:NM_016649.4Link to Protein Sequence:NP_057733.2Re-query CCDS DB by Nucleotide ID:NM_016649Re-query CCDS DB by Protein ID:NP_057733Link to BLAST:NP_057733.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263309.1 851 Q9H501 851 100% 0 0
NP_057733.2 851 Q9H501 851 100% 0 0

Chromosomal Locations for CCDS 13117.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 13714874 13715167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13717368 13717514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13718908 13718984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13728378 13728465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13733721 13733842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13759692 13759853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13766777 13766924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13769907 13770021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13771331 13771483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13772515 13772615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13775157 13775270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13775873 13776270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13782504 13783140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2556 nt):
ATGTCATCCAAACAAGAAATAATGAGTGACCAGCGGTTTAGACGGGTTGCAAAGGACCCGAGATTTTGGG
AAATGCCAGAAAAGGATCGAAAAGTCAAAATTGACAAGAGATTTCGAGCCATGTTTCATGACAAGAAGTT
CAAGTTGAACTATGCCGTGGATAAAAGAGGGCGCCCCATTAGCCATAGCACTACAGAGGATTTGAAGCGT
TTTTACGACCTTTCAGATTCTGATTCCAATCTCTCTGGTGAAGATAGCAAAGCATTGAGTCAAAAGAAAA
TAAAGAAGAAAAAAACCCAGACTAAAAAAGAAATCGATTCAAAAAATCTAGTTGAGAAAAAGAAAGAAAC
CAAGAAGGCTAATCACAAGGGTTCTGAAAATAAAACTGATTTAGATAATTCTATAGGAATTAAAAAAATG
AAAACCTCATGTAAATTTAAGATAGATTCAAACATAAGTCCGAAGAAGGATAGCAAAGAATTTACACAAA
AAAATAAGAAAGAGAAAAAAAACATTGTTCAACATACTACAGACTCTTCTCTCGAAGAAAAACAAAGGAC
ATTAGACTCAGGCACCTCTGAAATTGTGAAATCTCCCAGAATCGAGTGTTCTAAGACAAGAAGAGAAATG
CAATCAGTGGTTCAACTCATAATGACAAGAGACAGTGATGGTTATGAAAACTCAACAGATGGTGAAATGT
GTGACAAAGATGCTCTGGAGGAAGATTCAGAAAGCGTTAGTGAAATAGGAAGTGATGAGGAATCTGAAAA
TGAAATTACAAGTGTTGGTAGAGCTTCAGGTGATGACGATGGAAGTGAAGATGATGAAGAGGAGGATGAA
GATGAAGAGGAGGATGAAGATGAGGATAGTGAGGATGATGATAAAAGTGACAGTGGCCCTGATCTTGCAA
GGGGTAAAGGAAATATAGAAACTAGTTCTGAAGATGAAGATGATACGGCAGATTTGTTTCCAGAAGAATC
TGGTTTTGAGCATGCTTGGAGAGAATTAGATAAAGATGCTCCTCGTGCTGATGAGATTACACGTCGATTA
GCAGTTTGTAACATGGACTGGGATAGATTAAAGGCAAAAGATTTGCTGGCTCTGTTCAATTCATTTAAAC
CCAAAGGAGGTGTAATATTTTCCGTCAAGATATATCCTTCAGAATTTGGAAAGGAGAGGATGAAGGAAGA
GCAAGTTCAAGGACCAGTAGAGCTATTAAGTATTCCTGAAGATGCCCCAGAAAAAGACTGGACGTCTAGA
GAAAAATTGAGAGATTATCAATTCAAACGACTGAAGTACTATTATGCAGTAGTAGACTGTGATTCTCCGG
AAACAGCTAGTAAAATTTATGAGGATTGTGATGGCCTGGAATTTGAAAGTAGTTGTTCTTTCATAGATCT
AAGGTTTATACCAGATGATATTACTTTTGATGATGAGCCTAAGGATGTAGCCTCAGAAGTGAATTTAACA
GCATATAAACCAAAATATTTCACTTCTGCTGCAATGGGAACATCAACGGTGGAAATCACTTGGGATGAGA
CTGATCATGAAAGAATTACAATGCTCAACAGGAAGTTTAAAAAGGAAGAGCTTTTGGACATGGATTTTCA
AGCCTACTTAGCTTCCTCTAGTGAAGATGAAGAGGAGATAGAAGAGGAGCTACAAGGTGATGATGGAGTC
AATGTAGAAGAAGATGGGAAAACAAAGAAAAGTCAGAAGGATGATGAAGAACAAATTGCTAAATACAGGC
AGCTCTTGCAGGTTATTCAAGAAAAAGAAAAGAAAGGCAAAGAAAATGATATGGAAATGGAAATTAAATG
GGTTCCAGGTCTTAAAGAAAGTGCAGAAGAGATGGTCAAAAACAAATTGGAAGGAAAGGATAAACTGACC
CCTTGGGAACAATTTTTAGAGAAGAAGAAAGAGAAAAAAAGACTGAAAAGGAAACAGAAGGCTCTTGCTG
AAGAGGCCAGTGAAGAGGAACTTCCCTCTGATGTTGATTTGAATGACCCATACTTTGCTGAAGAAGTTAA
ACAAATAGGTATAAATAAAAAATCGGTAAAATCTGCAAAAGATGGCACATCTCCAGAAGAAGAAATTGAA
ATAGAAAGACAAAAGGCTGAAATGGCTTTGCTTATGATGGATGAGGACGAGGACAGTAAGAAACACTTCA
ATTACAACAAGATTGTGGAGCACCAGAATCTGAGCAAAAAGAAGAAAAAGCAGCTCATGAAAAAGAAGGA
ATTAATAGAGGATGACTTTGAGGTAAATGTTAACGATGCACGGTTTCAGGCAATGTACACTTCCCACTTG
TTCAATTTGGACCCCTCAGATCCCAATTTCAAGAAAACAAAAGCTATGGAAAAAATCCTTGAGGAGAAGG
CCCGGCAAAGAGAACGGAAAGAACAAGAACTTACTCAGGCAATAAAGAAAAAAGAGAGTGAGATTGAAAA
GGAATCACAAAGGAAGTCCATTGATCCTGCTTTGTCAATGTTGATTAAATCTATAAAAACCAAAACAGAG
CAGTTTCAAGCAAGAAAAAAGCAAAAAGTCAAATAA

Translation (851 aa):
MSSKQEIMSDQRFRRVAKDPRFWEMPEKDRKVKIDKRFRAMFHDKKFKLNYAVDKRGRPISHSTTEDLKR
FYDLSDSDSNLSGEDSKALSQKKIKKKKTQTKKEIDSKNLVEKKKETKKANHKGSENKTDLDNSIGIKKM
KTSCKFKIDSNISPKKDSKEFTQKNKKEKKNIVQHTTDSSLEEKQRTLDSGTSEIVKSPRIECSKTRREM
QSVVQLIMTRDSDGYENSTDGEMCDKDALEEDSESVSEIGSDEESENEITSVGRASGDDDGSEDDEEEDE
DEEEDEDEDSEDDDKSDSGPDLARGKGNIETSSEDEDDTADLFPEESGFEHAWRELDKDAPRADEITRRL
AVCNMDWDRLKAKDLLALFNSFKPKGGVIFSVKIYPSEFGKERMKEEQVQGPVELLSIPEDAPEKDWTSR
EKLRDYQFKRLKYYYAVVDCDSPETASKIYEDCDGLEFESSCSFIDLRFIPDDITFDDEPKDVASEVNLT
AYKPKYFTSAAMGTSTVEITWDETDHERITMLNRKFKKEELLDMDFQAYLASSSEDEEEIEEELQGDDGV
NVEEDGKTKKSQKDDEEQIAKYRQLLQVIQEKEKKGKENDMEMEIKWVPGLKESAEEMVKNKLEGKDKLT
PWEQFLEKKKEKKRLKRKQKALAEEASEEELPSDVDLNDPYFAEEVKQIGINKKSVKSAKDGTSPEEEIE
IERQKAEMALLMMDEDEDSKKHFNYNKIVEHQNLSKKKKKQLMKKKELIEDDFEVNVNDARFQAMYTSHL
FNLDPSDPNFKKTKAMEKILEEKARQRERKEQELTQAIKKKESEIEKESQRKSIDPALSMLIKSIKTKTE
QFQARKKQKVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH