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Report for CCDS33835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33835.1 Public Homo sapiens 3 FBXO40 24 110 108 CCDS HistoryNCBI Gene:51725Re-query CCDS DB by CCDS ID:33835.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33835.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338040.6 ENSP00000337510.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338040.6Link to Ensembl Protein Viewer:ENSP00000337510.4Re-query CCDS DB by Nucleotide ID:ENST00000338040Re-query CCDS DB by Protein ID:ENSP00000337510
Original member Current member NCBI NM_016298.4 NP_057382.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016298.4Link to Protein Sequence:NP_057382.2Re-query CCDS DB by Nucleotide ID:NM_016298Re-query CCDS DB by Protein ID:NP_057382Link to BLAST:NP_057382.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057382.2 709 Q9UH90 709 100% 0 0

Chromosomal Locations for CCDS 33835.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 121620576 121620578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121621433 121623343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121626695 121626910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2130 nt):
ATGGGGAAAGCCCGCAGATCCCCGCCAGGGCACCACAGGCATTGTGAGGGATGCTTCAACCGCCACTGCC
ACATTCCTGTGGAACCCAACACCTCCTGCCTGGTAATAAGCTGCCACCTGCTCTGTGGTGCCACCTTCCA
CATGTGCAAAGAGGCAGAGCACCAGCTCCTCTGCCCTTTAGAGCAGGTTCCGTGCCTCAACTCCGAATAT
GGCTGCCCTCTGTCCATGTCCCGCCACAAACTGGCCAAGCACCTGCAGGTGTGCCCCGCCAGCGTGGTCT
GCTGCTCCATGGAGTGGAACCGCTGGCCAAATGTGGACTCTGAAACCACCCTTCATGAAAACATCATGAA
AGAGACCCCCAGTGAGGAGTGTTTGGACACAGCCCTGGCCCTGCAGGATCAGAAGGTCCTCTTCAGATCC
TTGAAAATGGTGGAACTTTTCCCAGAAACTAGAGAGGCTACTGAGGAGGAACCAACTATGAATGGTGAAA
CCAGTGTGGAGGAAATGGGAGGAGCAGTGGGTGGAGTGGATATCGGTTTGGTACCACATGGTCTGTCAGC
AACTAATGGGGAGATGGCAGAGCTAAGTCAAGAAGAACGGGAGGTGCTAGCCAAAACCAAAGAAGGGATG
GACCTGGTCAAGTTTGGCCAGTGGGAAAATATTTTCAGCAAAGAGCACGCAGCCTCTGCTTTAACAAATT
CATCAGCGAGCTGTGAGAGCAAGAACAAGAATGACTCCGAGAAAGAACAGATTTCCAGTGGCCATAACAT
GGTAGAAGGAGAGGGCGCTCCCAAAAAGAAAGAACCACAGGAAAATCAGAAGCAGCAGGACGTTCGTACA
GCCATGGAAACCACAGGGCTTGCCCCTTGGCAGGATGGTGTTCTGGAAAGACTGAAAACAGCTGTGGATG
CAAAGGACTATAACATGTATCTAGTGCACAATGGGCGGATGCTGATACACTTTGGTCAGATGCCTGCTTG
TACACCCAAGGAGAGAGACTTTGTTTATGGCAAGCTGGAGGCTCAGGAAGTTAAGACTGTTTACACCTTC
AAAGTTCCTGTGAGCTACTGTGGAAAGCGAGCTCGACTTGGAGATGCCATGTTGAGTTGTAAGCCAAGTG
AACACAAGGCAGTGGATACTTCAGATTTGGGGATCACTGTGGAGGACCTGCCCAAATCAGATCTCATCAA
GACCACCCTCCAGTGTGCTTTGGAAAGAGAACTCAAAGGCCACGTCATCTCTGAATCCAGAAGCATTGAT
GGACTGTTCATGGATTTTGCCACACAAACATACAACTTTGAGCCAGAACAGTTTTCCTCTGGGACAGTGC
TGGCTGACCTAACCGCTGCCACCCCAGGGGGACTCCACGTGGAGCTCCACAGCGAGTGTGTGACCAGGAG
ACACAACAAAAGCAGCTCTGCCTTCACTTTCACTTGCAACAAATTCTTCAGGAGGGATGAGTTCCCCCTG
CACTTCAAGAATGTCCACACAGACATTCAGTCATGTCTCAATGGCTGGTTCCAGCATCGATGCCCCCTCG
CCTACTTGGGATGTACATTTGTTCAAAACCATTTCCGTCCCCCAGGGCAAAAGGCAAAAGTAATCTATAG
CCAGGAGCTCAAGACCTTTGCCATTAAGCCGGAGGTTGCTCCAGAGCTGAGCGAGGGAAGGAAGAACAAC
CATCTTTTGGGTCATGGAGGAAAAAGCCAGAATTCTTTAACCAGCCTGCCCCTGGAGATTTTGAAGTACA
TTGCTGGGTTCTTGGACAGCGTCAGCCTGGCCCAGCTCTCCCAGGTGTCTGTGCTGATGAGGAATATCTG
TGCCACTTTGTTACAAGAGAGAGGAATGGTCCTTTTGCAATGGAAGAAAAAGAGGTATTCCCATGGAGGC
ACCTCCTGGAGAGTCCACAGAGAGATCTGGCAGTTCAGCAGCCTCTTCTCCAAAATCAAGAGCTGGGAGT
TTAATGAAGTCACCTCCATGTCTGAGCACCTGAAGTCCTGTCCTTTCAACATTGTAGAGCACAAAACTGA
CCCGATTCTTTTGACTAGCATGTGTCAGCCCCGTGAGCAGGCCCGAGAGAGCTTAGTCTCCACCTTTAGA
ATCAGACCACGAGGAAGATACGTCTCCTAA

Translation (709 aa):
MGKARRSPPGHHRHCEGCFNRHCHIPVEPNTSCLVISCHLLCGATFHMCKEAEHQLLCPLEQVPCLNSEY
GCPLSMSRHKLAKHLQVCPASVVCCSMEWNRWPNVDSETTLHENIMKETPSEECLDTALALQDQKVLFRS
LKMVELFPETREATEEEPTMNGETSVEEMGGAVGGVDIGLVPHGLSATNGEMAELSQEEREVLAKTKEGM
DLVKFGQWENIFSKEHAASALTNSSASCESKNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQKQQDVRT
AMETTGLAPWQDGVLERLKTAVDAKDYNMYLVHNGRMLIHFGQMPACTPKERDFVYGKLEAQEVKTVYTF
KVPVSYCGKRARLGDAMLSCKPSEHKAVDTSDLGITVEDLPKSDLIKTTLQCALERELKGHVISESRSID
GLFMDFATQTYNFEPEQFSSGTVLADLTAATPGGLHVELHSECVTRRHNKSSSAFTFTCNKFFRRDEFPL
HFKNVHTDIQSCLNGWFQHRCPLAYLGCTFVQNHFRPPGQKAKVIYSQELKTFAIKPEVAPELSEGRKNN
HLLGHGGKSQNSLTSLPLEILKYIAGFLDSVSLAQLSQVSVLMRNICATLLQERGMVLLQWKKKRYSHGG
TSWRVHREIWQFSSLFSKIKSWEFNEVTSMSEHLKSCPFNIVEHKTDPILLTSMCQPREQARESLVSTFR
IRPRGRYVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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