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Report for CCDS13422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13422.1 Public Homo sapiens 20 SPATA2 24 110 108 CCDS HistoryNCBI Gene:9825Re-query CCDS DB by CCDS ID:13422.1Re-query CCDS DB by GeneID:9825See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13422.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289431.10 ENSP00000289431.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000289431.10Link to Ensembl Protein Viewer:ENSP00000289431.5Re-query CCDS DB by Nucleotide ID:ENST00000289431Re-query CCDS DB by Protein ID:ENSP00000289431
Original member Current member EBI ENST00000422556.1 ENSP00000416799.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000422556.1Link to Ensembl Protein Viewer:ENSP00000416799.1Re-query CCDS DB by Nucleotide ID:ENST00000422556Re-query CCDS DB by Protein ID:ENSP00000416799
Original member Current member NCBI NM_001135773.2 NP_001129245.1 Accepted alive Link to Nucleotide Sequence:NM_001135773.2Link to Protein Sequence:NP_001129245.1Re-query CCDS DB by Nucleotide ID:NM_001135773Re-query CCDS DB by Protein ID:NP_001129245Link to BLAST:NP_001129245.1
Original member Current member NCBI NM_006038.4 NP_006029.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006038.4Link to Protein Sequence:NP_006029.1Re-query CCDS DB by Nucleotide ID:NM_006038Re-query CCDS DB by Protein ID:NP_006029Link to BLAST:NP_006029.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129245.1 520 Q9UM82 520 100% 0 0
NP_006029.1 520 Q9UM82 520 100% 0 0

Chromosomal Locations for CCDS 13422.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 49905619 49906845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49908155 49908490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGGGGAAGCCCAGTTCAATGGATACTAAATTCAAGGATGACTTATTTCGGAAGTACGTGCAGTTCCATG
AGAGCAAAGTGGATACCACCACCAGCAGGCAGCGGCCTGGCAGCGATGAGTGCCTGCGGGTGGCAGCCTC
AACCCTGCTCAGCCTGCACAAGGTGGATCCCTTTTATCGATTCCGGCTGATCCAGTTCTATGAGGTGGTG
GAGAGCTCCTTGCGCTCGCTCAGCTCCTCTAGCCTGCGGGCTCTGCACGGCGCCTTCAGCATGCTGGAGA
CGGTGGGCATCAACCTCTTCCTCTACCCGTGGAAGAAGGAATTCAGAAGCATCAAGACCTACACGGGCCC
TTTTGTTTATTATGTCAAGTCGACATTACTGGAAGAGGACATCCGAGCCATCCTGAGCTGCATGGGCTAC
ACACCTGAGCTGGGCACTGCATACAAGCTCAGAGAGCTCGTGGAGACCCTCCAGGTGAAGATGGTCTCCT
TTGAGCTCTTTCTGGCCAAAGTCGAGTGTGAGCAGATGCTAGAAATCCACTCACAAGTGAAGGACAAGGG
CTACTCCGAGCTGGACATTGTGAGCGAGCGCAAGAGCAGTGCAGAGGATGTGCGCGGCTGCTCGGACGCC
CTGCGGCGGCGGGCAGAGGGCCGGGAGCACCTGACGGCCTCCATGTCACGAGTGGCACTCCAGAAGTCGG
CCAGCGAGCGGGCGGCCAAGGACTACTACAAGCCCCGCGTGACCAAGCCCTCGAGGTCAGTGGATGCCTA
TGACAGCTACTGGGAGAGCCGGAAGCCACCCCTGAAGGCCTCATTGAGTCTTCGGAAGGAGCCTGTGGCA
ACGGATGTGGGGGACGACCTCAAGGATGAGATCATCCGCCCATCCCCTTCGCTGCTGACCATGGCCAGCT
CCCCCCACGGCAGCCCGGATGTGCTTCCACCCGCCTCCCCCAGCAACGGCCCGGCCCTGCTGCGCGGTAC
CTACTTCTCCACTCAGGATGACGTGGATCTGTACACAGACTCTGAACCCAGGGCCACCTACCGTCGGCAG
GATGCTCTGCGGCCGGATGTGTGGCTGCTCAGAAACGATGCCCACTCCCTCTACCACAAGCGCTCGCCCC
CTGCCAAAGAGTCCGCCCTCTCCAAGTGCCAAAGCTGCGGGCTGTCCTGCAGCTCCTCCCTCTGCCAGCG
CTGTGACAGCCTGCTCACCTGTCCTCCAGCTTCCAAGCCCAGCGCCTTCCCCAGCAAGGCCTCGACTCAT
GACAGCCTGGCCCACGGGGCATCTCTGCGGGAGAAGTACCCAGGCCAGACTCAGGGCCTCGACCGCCTCC
CGCACCTTCACTCCAAATCCAAGCCCTCCACCACGCCCACTTCCCGCTGTGGCTTCTGCAACCGCCCAGG
CGCCACCAACACCTGCACCCAGTGTTCAAAAGTCTCATGTGACGCCTGCCTCAGCGCTTACCATTATGAC
CCCTGCTACAAAAAGAGTGAGCTGCACAAGTTCATGCCCAACAACCAGCTGAACTACAAGTCCACCCAGC
TCTCCCATCTCGTGTACAGATAG

Translation (520 aa):
MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYRFRLIQFYEVV
ESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVYYVKSTLLEEDIRAILSCMGY
TPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIHSQVKDKGYSELDIVSERKSSAEDVRGCSDA
LRRRAEGREHLTASMSRVALQKSASERAAKDYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVA
TDVGDDLKDEIIRPSPSLLTMASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQ
DALRPDVWLLRNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSCDACLSAYHYD
PCYKKSELHKFMPNNQLNYKSTQLSHLVYR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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