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Report for CCDS9749.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9749.2 Public Homo sapiens 14 SIX4 24 110 108 CCDS HistoryNCBI Gene:51804Re-query CCDS DB by CCDS ID:9749.2See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9749.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216513.5 ENSP00000216513.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000216513.5Link to Ensembl Protein Viewer:ENSP00000216513.4Re-query CCDS DB by Nucleotide ID:ENST00000216513Re-query CCDS DB by Protein ID:ENSP00000216513
Original member Current member NCBI NM_017420.5 NP_059116.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017420.5Link to Protein Sequence:NP_059116.3Re-query CCDS DB by Nucleotide ID:NM_017420Re-query CCDS DB by Protein ID:NP_059116Link to BLAST:NP_059116.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059116.3 781 Q9UIU6 781 100% 0 0

Chromosomal Locations for CCDS 9749.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 60713407 60714203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60719760 60720445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60723212 60724074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2346 nt):
ATGTCCTCTTCCTCCCCCACCGGGCAGATCGCAAGTGCGGCGGACATCAAGCAAGAGAATGGGATGGAAA
GCGCCTCGGAAGGGCAGGAGGCGCACCGAGAAGTGGCGGGGGGCGCGGCGGTAGGGCTGAGCCCCCCGGC
TCCAGCCCCTTTTCCCCTGGAGCCGGGGGACGCCGCGACCGCTGCCGCCAGGGTGAGCGGAGAGGAAGGG
GCAGTGGCGGCGGCGGCGGCCGGAGCGGCGGCGGATCAGGTACAACTCCACTCGGAACTTCTGGGCAGGC
ACCACCACGCCGCCGCCGCCGCCGCGCAGACCCCGCTGGCCTTCTCGCCCGACCACGTCGCCTGCGTGTG
CGAGGCACTGCAGCAGGGGGGCAACCTGGACCGCCTGGCCCGGTTCCTGTGGTCCCTGCCCCAGAGCGAC
CTGCTACGTGGCAACGAGAGCCTGCTGAAGGCGCGGGCGCTCGTGGCCTTCCACCAGGGCATCTACCCCG
AGCTCTACAGCATCCTCGAGAGCCACAGCTTCGAGTCGGCCAACCACCCGCTGCTGCAGCAGCTCTGGTA
CAAGGCGCGCTACACCGAGGCCGAGCGAGCCCGCGGCCGGCCGCTGGGAGCCGTAGACAAGTACCGGCTG
CGCAGGAAATTCCCCCTGCCCCGCACCATCTGGGACGGCGAGGAGACGGTGTATTGTTTCAAGGAGAAGT
CGCGCAACGCGCTCAAGGAGCTCTACAAGCAGAATCGCTACCCTTCGCCCGCCGAGAAGCGGCACCTGGC
CAAGATCACCGGCCTCTCCCTCACCCAGGTCAGCAACTGGTTCAAGAACCGCCGGCAGCGCGACAGGAAC
CCCTCCGAGACCCAGTCCAAAAGTGAGTCAGATGGCAACCCCAGCACTGAAGATGAATCCAGCAAGGGAC
ATGAGGATTTATCTCCTCACCCACTCTCCAGTTCATCTGATGGCATCACCAACCTCAGCCTTTCCAGTCA
TATGGAGCCAGTATATATGCAACAAATTGGAAATGCTAAGATATCATTAAGCTCTTCTGGAGTTCTGTTG
AATGGAAGCTTGGTACCTGCAAGTACTTCACCTGTCTTCCTTAATGGAAATTCTTTTATTCAGGGACCCA
GTGGAGTTATCCTTAATGGATTAAATGTGGGAAATACACAGGCAGTGGCATTGAACCCACCAAAAATGTC
ATCAAACATTGTGAGCAATGGTATATCCATGACTGACATACTGGGGTCTACTTCCCAGGACGTGAAGGAA
TTCAAAGTCCTCCAGAGTTCTGCTAACTCAGCAACCACCACGTCCTACAGCCCCAGTGTCCCTGTCTCAT
TCCCAGGCCTGATACCCAGCACTGAGGTGAAAAGAGAAGGCATTCAAACAGTGGCTTCCCAAGATGGAGG
GTCTGTAGTGACTTTTACTACACCAGTGCAAATTAACCAGTATGGCATTGTCCAGATCCCCAATTCCGGA
GCAAACAGCCAGTTCCTTAATGGGAGCATTGGATTCTCTCCACTGCAGCTGCCCCCTGTGTCAGTGGCAG
CTTCACAAGGTAATATCTCAGTAAGCTCAAGCACTTCAGATGGAAGCACATTTACAAGTGAGTCTACCAC
AGTCCAGCAAGGAAAGGTTTTCTTGAGCTCTCTTGCTCCCAGTGCAGTGGTATACACGGTTCCTAATACA
GGCCAGACTATAGGATCTGTGAAACAGGAAGGCTTGGAAAGGAGCCTGGTATTTTCTCAGTTGATGCCTG
TCAATCAGAATGCACAAGTAAATGCAAACCTGTCTTCTGAAAACATCTCGGGGAGTGGCCTGCATCCACT
GGCCTCCTCATTAGTTAATGTATCTCCAACTCACAATTTTTCTCTCAGTCCCTCTACACTACTAAATCCC
ACTGAGCTAAACCGCGACATTGCCGATAGCCAACCAATGTCTGCACCGGTGGCAAGCAAATCTACTGTGA
CATCTGTCAGCAACACTAACTATGCAACTCTTCAGAACTGCTCCCTTATTACTGGTCAAGACCTATTGTC
AGTCCCTATGACTCAGGCTGCCCTTGGGGAAATAGTTCCTACAGCTGAAGATCAGGTAGGTCACCCCTCC
CCAGCAGTACATCAGGATTTTGTCCAAGAACATCGTTTGGTTCTGCAATCGGTAGCTAACATGAAAGAGA
ATTTCTTATCAAATTCTGAGAGCAAAGCAACAAGTAGCTTAATGATGCTGGACTCTAAATCCAAGTATGT
CTTAGATGGCATGGTTGATACTGTCTGTGAAGACCTGGAAACAGACAAAAAAGAGCTTGCCAAGCTCCAG
ACTGTCCAGCTGGATGAAGATATGCAAGACTTATGA

Translation (781 aa):
MSSSSPTGQIASAADIKQENGMESASEGQEAHREVAGGAAVGLSPPAPAPFPLEPGDAATAAARVSGEEG
AVAAAAAGAAADQVQLHSELLGRHHHAAAAAAQTPLAFSPDHVACVCEALQQGGNLDRLARFLWSLPQSD
LLRGNESLLKARALVAFHQGIYPELYSILESHSFESANHPLLQQLWYKARYTEAERARGRPLGAVDKYRL
RRKFPLPRTIWDGEETVYCFKEKSRNALKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDRN
PSETQSKSESDGNPSTEDESSKGHEDLSPHPLSSSSDGITNLSLSSHMEPVYMQQIGNAKISLSSSGVLL
NGSLVPASTSPVFLNGNSFIQGPSGVILNGLNVGNTQAVALNPPKMSSNIVSNGISMTDILGSTSQDVKE
FKVLQSSANSATTTSYSPSVPVSFPGLIPSTEVKREGIQTVASQDGGSVVTFTTPVQINQYGIVQIPNSG
ANSQFLNGSIGFSPLQLPPVSVAASQGNISVSSSTSDGSTFTSESTTVQQGKVFLSSLAPSAVVYTVPNT
GQTIGSVKQEGLERSLVFSQLMPVNQNAQVNANLSSENISGSGLHPLASSLVNVSPTHNFSLSPSTLLNP
TELNRDIADSQPMSAPVASKSTVTSVSNTNYATLQNCSLITGQDLLSVPMTQAALGEIVPTAEDQVGHPS
PAVHQDFVQEHRLVLQSVANMKENFLSNSESKATSSLMMLDSKSKYVLDGMVDTVCEDLETDKKELAKLQ
TVQLDEDMQDL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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