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Report for CCDS39196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39196.1 Public Mus musculus 5 Zfp644 23 108 98 CCDS HistoryNCBI Gene:52397Re-query CCDS DB by CCDS ID:39196.1Re-query CCDS DB by GeneID:52397See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39196.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045466.13 ENSMUSP00000038047.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045466.13Link to Ensembl Protein Viewer:ENSMUSP00000038047.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045466Re-query CCDS DB by Protein ID:ENSMUSP00000038047
Original member Current member EBI ENSMUST00000112698.7 ENSMUSP00000108318.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112698.7Link to Ensembl Protein Viewer:ENSMUSP00000108318.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112698Re-query CCDS DB by Protein ID:ENSMUSP00000108318
Original member Current member NCBI NM_001363318.1 NP_001350247.1 Accepted alive Link to Nucleotide Sequence:NM_001363318.1Link to Protein Sequence:NP_001350247.1Re-query CCDS DB by Nucleotide ID:NM_001363318Re-query CCDS DB by Protein ID:NP_001350247Link to BLAST:NP_001350247.1
Original member Current member NCBI NM_001363319.1 NP_001350248.1 Accepted alive Link to Nucleotide Sequence:NM_001363319.1Link to Protein Sequence:NP_001350248.1Re-query CCDS DB by Nucleotide ID:NM_001363319Re-query CCDS DB by Protein ID:NP_001350248Link to BLAST:NP_001350248.1
Original member Current member NCBI NM_001363320.1 NP_001350249.1 Accepted alive Link to Nucleotide Sequence:NM_001363320.1Link to Protein Sequence:NP_001350249.1Re-query CCDS DB by Nucleotide ID:NM_001363320Re-query CCDS DB by Protein ID:NP_001350249Link to BLAST:NP_001350249.1
Original member Current member NCBI NM_001363321.1 NP_001350250.1 Accepted alive Link to Nucleotide Sequence:NM_001363321.1Link to Protein Sequence:NP_001350250.1Re-query CCDS DB by Nucleotide ID:NM_001363321Re-query CCDS DB by Protein ID:NP_001350250Link to BLAST:NP_001350250.1
Original member Current member NCBI NM_026856.2 NP_081132.2 Accepted alive Link to Nucleotide Sequence:NM_026856.2Link to Protein Sequence:NP_081132.2Re-query CCDS DB by Nucleotide ID:NM_026856Re-query CCDS DB by Protein ID:NP_081132Link to BLAST:NP_081132.2

Chromosomal Locations for CCDS 39196.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 106618236 106618428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 106619540 106619642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 106634831 106635436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 106635610 106636323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 106636417 106638635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 106666785 106666828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3879 nt):
ATGAGATTATTCTTGCATCAAGATGTTAATAAGCCAAAATTTAGACTAAAGGTGTTAAATGATCTTGCCA
ACAATATGGATGATTTGAAGATAAACACCGACATTACTGGTGCTAAAGAAGAACTCCAAGATGACAACAA
TTTTATCTCTGAGAAAGACAGTGGAGTTCATAAACCAAAAGATTGTCAGACATCATTTCAGAAAAACAGT
TCATTGACTCGATCTGAGGAATTGTCAGAGGATCAATCAGAACAAGCCTTAAGTGGAGGCCAGTCTGCTT
TGTTTCTCCCTGCCAGCACTCCTGCTGTTCCTACTGAAAACTTTCCCTTGCCCACAGGAGCTGTTGTTAA
TGGACCAGTCTCATGCTCCTCCTCCACAAAGACTTCCAATATGAATGAAGGTAGTGTTTCATTAACCCCT
GGACAGCCTGCAGATCAGCTAGCAGCAGAGTCTTGCTCCACTTTGAAGGCAGCAGCTGATCATCAGCTGT
CTACACCACAAAAAGCAAGTCAACACCAAGTTCTGTTTTTGTTATCAGATGTAGCACATGCTAAGAATCC
AACCCATTCCATTAAAAAAGTACCTACCTCTGCTTTAGTTGGTTGTGATGTTCAGAATTCAGTAGGGAAT
AACATGAAGTCAGAGAGCACTTTACTAAGTCAAGCAGAGGTGGGTCAGGGCGACGCCTCCACAGTGGTCA
GAGACGACTGTGTCAGCGCGTTAGCAGTGATTTCCTCAGGTACAGACGAATTTAGGTCAGAAAATGATAC
AAACTGGGATCCCCAAAAAGAGTTCATTCAGTTTCTTATGACTAGTGAAGAGACGGTGGATAAGCCCCCA
GCTCATTCTAAAGTAGTAGGTCTAGAAAAAAAGAGAAAGAGAAAAATGGATGTGAGCAAGATCACTCGCT
ACACAGAGGACTGCTACAGTGACTCAGGCCGTGCACCTGGAAAATCAAAAATTCTTCAGGTTGACTTTCT
AGGGCAAAACGAGGAGATGCAAGCAATAGACTCACAGAACTACACATTATCAAAAGTGAAACCCGAGTCA
GCTGGTGGAGACTTGGAGTCTGTGGACACTTTTCAGCATCTAGTTTATAACTCAGATAAATGTGGAGAGG
ATAATTCACCTGTTCATACTCGCACTTTAATTTCAAATACCTTAAAAAAGAAATGTGAAGAGAGTGATCC
TGAGTCACCTGTTGCTTTCAGTACTGAAGAGCCATCATTCTACCCCTGTACAAAGTGCAATGTGAATTTT
AGGGAGAAAAAGCATCTCCACAGGCATATGATGTATCATTTAGATGGGAATAGTCACTTTCGCCACCTTA
ATGTCCCCAGGCCATATGCTTGTAGAGAATGTGGACGGACATTTCGAGATCGTAATTCACTACTAAAGCA
TATGATCATTCACCAAGAAAGACGGCAGAAGCTGATGGAAGAGATTCGTGAGCTGAAAGAGCTCCAGGAT
GAAGGCAGAAGTGCTCGACTCCAGTGCCCTCAGTGTGTGTTTGGTACCAATTGCCCTAAGACGTTTGTGC
AACATGCAAAAACCCATGAGAAAGACAAACGGTACTACTGCTGTGAGGAGTGTAACTTCATGGCAGTGAC
GGAGAATGAGCTGGAATGCCATAGGGGCATCGCCCACGGAGCAGCAGTGAAGTGTCCTGTTGTGAGTTCA
GAAGTAACTCAGAGAAAAACACAAAAGAAGACTTCAGTGAAAGACTCTGTTATAGGATCATCCAAAAAAC
CTGCTACTTACCTATGTAAGATGTGTCCCTTCACTACTTCAGCCAGAAGTATTCTGAAGAAGCACACGGA
GTATTTGCATTCCTCGGCGTGTGTTGACTCCTTTGGTAATCCACTGGGACTTGACAAAAGAAAAAATGAC
AGCCTCGAGGAGTCTGTAGATGTCGATAGCACCAAGTCATTAGCTAAGCAGCAGCCAAGTACATTTCCAA
AGAACTCTGCTTTAAAACAGGATGCTAAACGGACATTTGGATCAAGCTCACAGTCAAGTAATTTTTCAAA
ATTTCATAAGCGGCCACATAGAATACAAAAAGCCCGGAAAAGCATTGCCCAATCTGGTGTAAATTCGTGC
AGTCAAAACAAGTCTCCTCACAAGAACGTTATGGTTAAGAGCAGCACTGACCAACAACCAAAGTATTTCC
ATCAGGCCCCAAGAGAAAAACCTAACGCCAGGGCAGACAGCAGTTATTTATATAGACACAAGTATAACAA
CTACCGGACGATCAGAAAATCAGACCCTCATAATGCAGACACCAAAAGGCCAGAAAACGAGAAAGACCAC
AAGCGTGTAGCTGTGAAAAGAGTAGCTAAGGCCTCAAAGAAGGAAAGCTCTGCTGGAGAGGACTTGGATA
GCTATCCCGACTTTCTGCATAAAATGACTGTTGTTGTTTTGCAAAAGCTTCATTCTGATAAGAAAGATAG
TTACGAAACAGAAGATGACAGCTCCTGGGATAACGTTGAGTTAGGTGACTACACTACACAGGCCATGGAA
GAAGAAGCCTACAGTGACCTTAGTCAAGAACATGTAAACTTATTGCCCCTGTTTAAAAGCAAGATAGAGG
GCCAGGGCCCTGGAGACAGTGCTGCCCTGAGTTACGATCAGAATGATGGCTTCTACTTTGAATATTATGA
AGACGGTGGCACTAACAGCTTTTTACAGGATATACATGATCCTCAGCATTTGGAAAACCCAGAAACGCCT
TTGTCAAAGCATAGTTCTGTTTTTCATTGGACTGATTTGTCTCTTGAGAAGAAGTCATGTCCTTATTGCC
CAGCAACATTTGAAACAGGTGTTGGGTTGTCAAATCATGTCCGAGGACATCTTCACAGAGCAGGATTGAG
CTATGAAGCCCGTCATGTTGTATCACCAGAACAAATAGCCACAAGTGACAAGATGCAGCACTTCAAAAGA
ACTGGCAACGGGACGCCTGTGAAACGAGTTAGAAAAGCTATAGAGAAGTCTGAAACTACTTCCGAACATA
CTTGTCAGCTCTGTGGTGGTTGGTTTGACACAAAGATTGGGTTATCAAATCATGTCAGAGGCCATCTGAA
AAGACTTGGGAAAACTAAATGGGATGCTCACAAATCTCCAATCTGTGTTCTGAATGAGATGATGCAAAAC
GAAGAGAAGTATGAAAAGATCCTGAAGGCGCTCAACAGTCGCCGCATTATCCCCAGACCGTTTGTAGCTC
AGAAACTCTCCTCAGGCGATGACTTCCTATCTCACAATGTCTTACCTCTTGATGAATACCACAATGGCCT
AAAGACAGAGGCTCTCTCAGTGTCTGCATCAGAGGAAGAAGGGCTGCATTTCTTAAGTGAGTGTGGTGAA
AGAAAGCCTGAACTGCCCAGTGGGAGAAAGAACCAGTCTCTTACACTGATAGAACTTCTTAAAAGTAGAA
GGCTAGGCGAAGAAAGGAATTCTGCAGTCTCTCCTCACAAGACCCATAACCAGACAGCAAGAAAGAGATT
TGTTCAGAAATGTGTTCTTCCATTAAACGAAGACAGTCCGTTGATCTATCAGCCACAAAAAATGGACTTG
ACTGTGCACTCAGCCATAGATTGTAAGCAGAAGAAATCAAGGTCAAGATCTGGAAGCAAGAAGAAAATGC
TAACGTTGCCTCATGGTGCTGACGAGGTTTACATTCTCCGATGCAGGTTTTGTGGCCTAGTCTTTCGGGG
ACCATTGTCTGTTCAGGAAGACTGGATTAAGCACTTACAGCGTCACATTGTAAACGCTAATCTTCCACGG
ACTGGAGCTGGCATGGTGGAAGTCACATCACTACTTAAAAAGCCTGCCTCTATCACAGAAACGTCGTTTT
CTTTACTAATGGCAGAAGCAGCATCATAG

Translation (1292 aa):
MRLFLHQDVNKPKFRLKVLNDLANNMDDLKINTDITGAKEELQDDNNFISEKDSGVHKPKDCQTSFQKNS
SLTRSEELSEDQSEQALSGGQSALFLPASTPAVPTENFPLPTGAVVNGPVSCSSSTKTSNMNEGSVSLTP
GQPADQLAAESCSTLKAAADHQLSTPQKASQHQVLFLLSDVAHAKNPTHSIKKVPTSALVGCDVQNSVGN
NMKSESTLLSQAEVGQGDASTVVRDDCVSALAVISSGTDEFRSENDTNWDPQKEFIQFLMTSEETVDKPP
AHSKVVGLEKKRKRKMDVSKITRYTEDCYSDSGRAPGKSKILQVDFLGQNEEMQAIDSQNYTLSKVKPES
AGGDLESVDTFQHLVYNSDKCGEDNSPVHTRTLISNTLKKKCEESDPESPVAFSTEEPSFYPCTKCNVNF
REKKHLHRHMMYHLDGNSHFRHLNVPRPYACRECGRTFRDRNSLLKHMIIHQERRQKLMEEIRELKELQD
EGRSARLQCPQCVFGTNCPKTFVQHAKTHEKDKRYYCCEECNFMAVTENELECHRGIAHGAAVKCPVVSS
EVTQRKTQKKTSVKDSVIGSSKKPATYLCKMCPFTTSARSILKKHTEYLHSSACVDSFGNPLGLDKRKND
SLEESVDVDSTKSLAKQQPSTFPKNSALKQDAKRTFGSSSQSSNFSKFHKRPHRIQKARKSIAQSGVNSC
SQNKSPHKNVMVKSSTDQQPKYFHQAPREKPNARADSSYLYRHKYNNYRTIRKSDPHNADTKRPENEKDH
KRVAVKRVAKASKKESSAGEDLDSYPDFLHKMTVVVLQKLHSDKKDSYETEDDSSWDNVELGDYTTQAME
EEAYSDLSQEHVNLLPLFKSKIEGQGPGDSAALSYDQNDGFYFEYYEDGGTNSFLQDIHDPQHLENPETP
LSKHSSVFHWTDLSLEKKSCPYCPATFETGVGLSNHVRGHLHRAGLSYEARHVVSPEQIATSDKMQHFKR
TGNGTPVKRVRKAIEKSETTSEHTCQLCGGWFDTKIGLSNHVRGHLKRLGKTKWDAHKSPICVLNEMMQN
EEKYEKILKALNSRRIIPRPFVAQKLSSGDDFLSHNVLPLDEYHNGLKTEALSVSASEEEGLHFLSECGE
RKPELPSGRKNQSLTLIELLKSRRLGEERNSAVSPHKTHNQTARKRFVQKCVLPLNEDSPLIYQPQKMDL
TVHSAIDCKQKKSRSRSGSKKKMLTLPHGADEVYILRCRFCGLVFRGPLSVQEDWIKHLQRHIVNANLPR
TGAGMVEVTSLLKKPASITETSFSLLMAEAAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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