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Report for CCDS37543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37543.1 Public Mus musculus 17 Umodl1 23 108 98 CCDS HistoryNCBI Gene:52020Re-query CCDS DB by CCDS ID:37543.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37543.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066554.12 ENSMUSP00000067443.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066554.12Link to Ensembl Protein Viewer:ENSMUSP00000067443.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000066554Re-query CCDS DB by Protein ID:ENSMUSP00000067443
Original member Current member EBI ENSMUST00000114555.2 ENSMUSP00000110202.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114555.2Link to Ensembl Protein Viewer:ENSMUSP00000110202.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114555Re-query CCDS DB by Protein ID:ENSMUSP00000110202
Original member Current member NCBI NM_177465.4 NP_803416.2 Accepted alive Link to Nucleotide Sequence:NM_177465.4Link to Protein Sequence:NP_803416.2Re-query CCDS DB by Nucleotide ID:NM_177465Re-query CCDS DB by Protein ID:NP_803416Link to BLAST:NP_803416.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803416.2 1348 Q5DID3-2 1348 100% 0 0

Chromosomal Locations for CCDS 37543.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 30954748 30954826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30959131 30959373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30966611 30966772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30968448 30968566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30971784 30971973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30973694 30973810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30980347 30980601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30982264 30982376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30983953 30984172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30984713 30984850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30986069 30986635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30987840 30988097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30989444 30989556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30992079 30992292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30994679 30994813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30996127 30996446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30998039 30998184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30998611 30998847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30999067 30999226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31002812 31002890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31008560 31008741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4047 nt):
ATGATGTCCAGGACCGTGAGGCTGGTCCTGTTGGCTTTGGCCTGTACTGTGGACCTGAGCCAGGCCAGTG
GCTTTACAGAAAATGGCCTCTCCCTGCTGAGCTACCAGCTCTGCAGCTACCCGGTGACCCGAAGTGTCCA
GAAGCTGCAGGCTGTGCAGACCTCTCACACAGCCTACGTGTACTGTGGAGGATGGATCCCCTGGAAAAAG
TGCCCCAAGACTGTGTACCGGACCCAGTACCTAGCGATGGATGTCCCTGAGTCCAGGAATGTGACCGACT
GCTGTGCGGGCTTTGAGCAGCTTGGCCTCTACTGCGTTCTGTCCCTGAACCGGTCCCGGGAGTTTGCATC
GAGGCCCGGGGTCTGCCCGACTGCTGAAGCAGAGCCACTTAGCCCTTCATGCAGCTTGGACACAGACTGC
TCTGGACTTCAGAAGTGCTGTTCCTGGCCAGGGGGCCGCCACTGTGTGTCCCCCACACCCACAGGTACAG
AGAAGAGCATGGTGAGCTGGTACAACGTGACTGTGCTGGTGAAGGTGGGCTTCGAGGACCTGCAGCGAGA
GGACCCTGGGCTCCGGAACCACACGCGCCTGCTCTACTCTTTGGTTACCAGTGCCTTGCAGCCTCTGAAC
CCAGCTGTACACTACCTGACCTCGACTGGTGGCAAGGACACATTCACCACTGTGTCATGGCTACTGATGG
GCTTTCCACGGCTCATGACGGTAGCCAATGTCTCCGTCATGTTGGATGACATGGTGAATCGGGTCTATGA
GGTGGTCAGCATCCAGGTGCAAGACGTGAACGAGTGTCTTCACAGTGAGCTGCAAGCCTGCTCTGTAAGA
GAGCAGTGTCGGAACCTGGAGGGCTCCTACCAATGTGTGTCTTCCCAGCGGCTGAACCACACAGATGAAG
ATTGCCCTCCAATCCGAGATTTCGTGGCACTTAATGTCACCAGCAGCAGTTTCCATGTGTCCTGGAGTTT
GAATTCCACTCAGAACTACAATTTCCACATTCAAGTGTACAAAGGCAAAGAGATACTCAGAAGCGCTTGG
ACAAGGGGCCACACTATGGCTGTGTCTGACTTGGAGGCTGGAGTACTTTACAGAGTGAGGACTAGCTACC
TGGGGTGCGGGGCCAATGTCTCTGCCACACTGGTTGTCAAGACAGATGCCCAGGTTTTCCAAGTCACAAT
ACGGATCATGGACCGTAACCTGACAGAGCAGATTCTTGACTGCAGCAGCGGGGAATTCTGGAACTTTTCT
CGACAGCTGTTTCATGAGGTGCAAAACTCCTTCCCCCAAGCCATCTCTGACCTGTACAGACAAGGGAGGC
TGAGGATGCAGATCGTGTCTCTGCAGGCAGGGAGTCTAGTGGTGACGCTTAGACTCACCCTGCAAGACCC
TGACTTTTCAGTGGGGGTCCACACACTGACGCCTATGCTGCCCGTCCTGTCTGTGAGCAACGTGTTCCAG
GTTGACCAGCAGAGGACATTCGTGCAAGACTGGGATGAGTGTGCACACAGCTCGGAGCATGACTGCCACC
CGAGCGCACGCTGCATCAACCTGGAGGGCTCCTACACGTGCCAGTGCCTCACAGCCAGGGATGCCAGCCC
CTCCAGGGCTGGCAGGGTCTGCGAGGGTGACATGGTGATCCCCACAGGAGATGAACTGTCTGTAACAACG
AAGGTCACAGTCCCAGCTGCCAGTACGGGAATAACAACCTTTGGCCCAGAGACCCTCACCGAGTCACTAA
GTTCCAAGCACCCAAGGAGCACCCCAGCAAGAAGTCAAACCTGGACCCCAGTGCCCCCATCAGTGAGAGA
TGGGGGTAGCATAGTCAGGCAGGATAGGAATAGCACGGGACAAGGTATGGAGGTGCCCAACGTGACCCCA
AACCTGGGCAAAACCCACAGAAGTACCAGTGGGGTGACAAGCTCTGTTCCCTGGGCTCCAGGACAGACCC
ATGGAACCCATCAGGGGACCACAGATGCCCCACTGCACACCACTCGAGAGTCACAGGAACTTATCACCAA
AGATCCACCCTTCCTGACTGCTACAACCACGGGCTATGTTGTGTGGCACTCCAGTCCCACTTGGAAGACA
CCTCCGAACTCCACAAGACTACAGAATGAAGACCCTCGATCTTCCTCCTTCCCAGGCCCGCCATCGGCCC
CAACCGATGTGACTCCAGAGTCCCCTGCCTGTGTTCCTGGACCCATTGGAAAGGTCACGGTCTCTAACGT
GACCAGTACCAGCTTCTCCCTCGAGTGGCCTGCAGACATCCGCCTCTCCCCTGCCTTCCACCTCACATTG
GTCTCTCCTCGGGGTCCTGCCATGACCATGGAGACCCAGAACAATAATGTGACATTGTCAGGACTGGAAT
GGGGAACCTTGTATCTGGTGGAGATTGTGGCTAAGGTGTGTGGGAAAGAAGGTGCCAGAACACAGCTGAA
AGTGCGGACAGTGGCCCAGAAACTTGCCGGTAACGTCCGGATCACGAGCATGCAGTATTCGGAATCCTTC
CTCAATACCAGCAGCAGGGAGCACCGAGAGTTCGTAGAGTTGTTCTTCAGAACGGTGCGGGACTCTCTGC
CAGCCACGCTGCGTCAGCACATGGATGCAGGCAGGATCCGTGTGGACATCATTAACATCACAAATGGCAG
CATCGTGGTGGAGTTTAATCTGCTAATGACAGCAGACCTTGATGTCAGGGAGGTGTCTGCTGGCTTCCTC
AATGCCTTACAGAACACATCGATGCTGGAGGTGGTCAGAGGCAAAACTTTTATGCAAGATTACAACGAGT
GTGACATGAAAGAGGATGACTGTGCCCCTGGGACATGCAGGAACACTTTCGGGTCTTTTACATGTAGCTG
TGATGAGGGAGGACCTGACTCACAGGTGGAATATTCTGGAAGGTCCTGTGATGGTGACCCTTCTGGCAAC
ATGACCCAGACCCCAGGCTCAGAGTGGTCTCCTACCCCAGCAGGAACTAGGGGTGTCCCTGTGCCAATTG
CCAGCTCCACAGCCCAGGACCTTCCCCTGCGGCTGAACCTGATGGACGCTGTTAGCGTGTCCTGTGAGAT
CGAGACGGTGATCATCACCATCCAGAAGCGCTTTCTGCAGCAGGCGGCCATACCTGAGGCCTCCCTGTAC
CTGGGAGAGCCATCCTGCAATGTGAGCAGAAGCAACAGCACACACGTGTTTCTGGTGGCTGGCTGGGGCG
AGTGTGGGACCATCTTACAGAGTAACATGACCACCACAGTGGTGACGACCACGCTGAGGAACAACCTGTC
CCCAGAGGGTGTCATCCACCACCCACAGTTCCTCAGTCCTATCCACTGTGCCTTCCAGAATGACGTTCTG
ACTTCCTCGGGCTACACCCCACAGTGGGGGGTCTACACCGTCATCGAAGACCTCCACGGGACTGGAAATT
TTGTCACAGAAATGCAGTTGTACATTGGCGATTCTCCCATACCTCAGAACTATAGCGTGTCCGCCAGCGA
TGAGATCAAGATTGAGGTGGGGCTTCACAGGCAGAAGAGCAGTCTGAAGGTCGTGCTGACTGAGTGCTGG
GCCACCCCCTCCAGCAACGCCAAGGACCCCGTAACCTTCAGCTTCATCAACAACAGCTGCCCTGTTCCCA
ACACCTACACCAGCGTGATTCAGAATGGCCACTCCAGCAAGGCCCAGTTCAAGCTGAGAATCTTCTCCTT
CATCAACAACTCCATCGTCTACCTGCACTGCAAGCTGAGAGTGTGCATGGAGAACCCCAGGAACTCGTGC
AGGATAAGCTGCAACGACTTCCGGTCGCTGAGAAGTAGTGAAGCCTTGCACCAGATGACCTGGGGGCCCC
TCCATCGGACTGAAGGTGCACAGGCATGTACAAAGCCAGTCCTGGGGACCGGTTACATCATTCTCCTAGC
GGCAGCTGCACTTCTGGTAGTGGCAGGGGCCACAACCCTTCTGATCTTGCGTTACCAGAGAGTAAGGCAG
AAATACAATCTTCGGATCCAGACCGACGACTTCAGCTACCAGGTGTTCTCTCAATAG

Translation (1348 aa):
MMSRTVRLVLLALACTVDLSQASGFTENGLSLLSYQLCSYPVTRSVQKLQAVQTSHTAYVYCGGWIPWKK
CPKTVYRTQYLAMDVPESRNVTDCCAGFEQLGLYCVLSLNRSREFASRPGVCPTAEAEPLSPSCSLDTDC
SGLQKCCSWPGGRHCVSPTPTGTEKSMVSWYNVTVLVKVGFEDLQREDPGLRNHTRLLYSLVTSALQPLN
PAVHYLTSTGGKDTFTTVSWLLMGFPRLMTVANVSVMLDDMVNRVYEVVSIQVQDVNECLHSELQACSVR
EQCRNLEGSYQCVSSQRLNHTDEDCPPIRDFVALNVTSSSFHVSWSLNSTQNYNFHIQVYKGKEILRSAW
TRGHTMAVSDLEAGVLYRVRTSYLGCGANVSATLVVKTDAQVFQVTIRIMDRNLTEQILDCSSGEFWNFS
RQLFHEVQNSFPQAISDLYRQGRLRMQIVSLQAGSLVVTLRLTLQDPDFSVGVHTLTPMLPVLSVSNVFQ
VDQQRTFVQDWDECAHSSEHDCHPSARCINLEGSYTCQCLTARDASPSRAGRVCEGDMVIPTGDELSVTT
KVTVPAASTGITTFGPETLTESLSSKHPRSTPARSQTWTPVPPSVRDGGSIVRQDRNSTGQGMEVPNVTP
NLGKTHRSTSGVTSSVPWAPGQTHGTHQGTTDAPLHTTRESQELITKDPPFLTATTTGYVVWHSSPTWKT
PPNSTRLQNEDPRSSSFPGPPSAPTDVTPESPACVPGPIGKVTVSNVTSTSFSLEWPADIRLSPAFHLTL
VSPRGPAMTMETQNNNVTLSGLEWGTLYLVEIVAKVCGKEGARTQLKVRTVAQKLAGNVRITSMQYSESF
LNTSSREHREFVELFFRTVRDSLPATLRQHMDAGRIRVDIINITNGSIVVEFNLLMTADLDVREVSAGFL
NALQNTSMLEVVRGKTFMQDYNECDMKEDDCAPGTCRNTFGSFTCSCDEGGPDSQVEYSGRSCDGDPSGN
MTQTPGSEWSPTPAGTRGVPVPIASSTAQDLPLRLNLMDAVSVSCEIETVIITIQKRFLQQAAIPEASLY
LGEPSCNVSRSNSTHVFLVAGWGECGTILQSNMTTTVVTTTLRNNLSPEGVIHHPQFLSPIHCAFQNDVL
TSSGYTPQWGVYTVIEDLHGTGNFVTEMQLYIGDSPIPQNYSVSASDEIKIEVGLHRQKSSLKVVLTECW
ATPSSNAKDPVTFSFINNSCPVPNTYTSVIQNGHSSKAQFKLRIFSFINNSIVYLHCKLRVCMENPRNSC
RISCNDFRSLRSSEALHQMTWGPLHRTEGAQACTKPVLGTGYIILLAAAALLVVAGATTLLILRYQRVRQ
KYNLRIQTDDFSYQVFSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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