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Report for CCDS3478.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3478.2 Public Homo sapiens 4 NFXL1 24 110 108 CCDS HistoryNCBI Gene:152518Re-query CCDS DB by CCDS ID:3478.2Re-query CCDS DB by GeneID:152518See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3478.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329043.7 ENSP00000333113.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000329043.7Link to Ensembl Protein Viewer:ENSP00000333113.4Re-query CCDS DB by Nucleotide ID:ENST00000329043Re-query CCDS DB by Protein ID:ENSP00000333113
Original member Current member EBI ENST00000381538.7 ENSP00000370949.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381538.7Link to Ensembl Protein Viewer:ENSP00000370949.3Re-query CCDS DB by Nucleotide ID:ENST00000381538Re-query CCDS DB by Protein ID:ENSP00000370949
Original member Current member EBI ENST00000507489.2 ENSP00000422037.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000507489.2Link to Ensembl Protein Viewer:ENSP00000422037.1Re-query CCDS DB by Nucleotide ID:ENST00000507489Re-query CCDS DB by Protein ID:ENSP00000422037
Original member Current member NCBI NM_001278623.1 NP_001265552.1 Accepted alive Link to Nucleotide Sequence:NM_001278623.1Link to Protein Sequence:NP_001265552.1Re-query CCDS DB by Nucleotide ID:NM_001278623Re-query CCDS DB by Protein ID:NP_001265552Link to BLAST:NP_001265552.1
Original member Current member NCBI NM_001278624.2 NP_001265553.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001278624.2Link to Protein Sequence:NP_001265553.1Re-query CCDS DB by Nucleotide ID:NM_001278624Re-query CCDS DB by Protein ID:NP_001265553Link to BLAST:NP_001265553.1
Original member Current member NCBI NM_152995.6 NP_694540.3 Accepted alive Link to Nucleotide Sequence:NM_152995.6Link to Protein Sequence:NP_694540.3Re-query CCDS DB by Nucleotide ID:NM_152995Re-query CCDS DB by Protein ID:NP_694540Link to BLAST:NP_694540.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265552.1 911 Q6ZNB6-1 911 100% 0 0
NP_001265553.1 911 Q6ZNB6-1 911 100% 0 0
NP_694540.3 911 Q6ZNB6-1 911 100% 0 0

Chromosomal Locations for CCDS 3478.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 47848163 47848336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47851095 47851148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47851856 47851942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47855059 47855163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47862846 47862915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47875127 47875293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47878525 47878665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47879096 47879117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47884346 47884437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47885498 47885657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47885879 47885999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47890613 47890703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47894180 47894302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47896523 47896647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47897967 47898081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47898757 47898857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47898959 47899120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47899370 47899548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47903193 47903323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47905237 47905346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47910824 47910994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47913969 47914203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2736 nt):
ATGGAAGCTTCCTGGCGCCAGGTGGCCGGTGGCCGAGGCCGATCCCGGGGACGGGCCACTGCCGCCCCCT
CAGGAAATGGAGTCCATCTCCGCGGCGCCGGAGGAGGGCGAGAGAAGGGGTCGGTGGGCGCAGTTCCTTC
TGGCACCAGTCCCGGAGGAGTCGCGACCACGGCGGCTGCAGGGAGCAGGCACAGCCCCGCAGGATCCCAA
GCCCTGCAGACTACCGCAGCCAGCGAGCTAATGTCTCAGAAAAAATTTGAAGAAATCAAGAAAGCTAACC
AAGCTGCAGCCAGAAAACTTGTTGAAGAACAGTTTAGCTCTTCATCTGAAGAAGGAGATGAAGATTTTGA
AGGAAAACAGGGAAAAATACTTGCAAATACGTTTATAACATACACTACTCAGACAGATGGAGATACACGT
GAATTAGAGCGAACAAAACAATATGTAAATGAAGCTTTTCAAGCAGGGGCTATGACATGCCTAATTTGTA
TTGCTTCGGTGAAGAGAAACCAAGCAGTTTGGAGCTGTTCGGGATGTTTCTGTATATTTCACATGCCCTG
TATCCAGAAGTGGGCTAAAGACAGCCAGTTTCTTGTATCTTCTGTGACTGATGATGATTTTGGAAAGAAA
GATTGTCCCTGGCCTTGTCCAAAATGTAGGTTTGAATACAAACGATCTGAAACACCTAGTAGGTACTATT
GCTATTGTGGAAAAGTAGAAGATCCACCTTTAGATCCGTGGCTTGTGCCTCATTCATGTGGCCAAGTATG
TGAGCGTGAATTTAAACCTCCTTGTGGCCATAAATGTTTACTCCTCTGTCATCCAGGTCCCTGCCCTCCT
TGTCCAAAGATGGTCACAACTACTTGTTACTGTAAGAAAGCAAAACCTATCCCTCGTAGGTGCAGTGCCA
AGGAATGGTCTTGTCAGCTGCCATGTGGACAGAAGTTGCTTTGTGGGCAACATAAGTGTGAAAATCCTTG
TCATGCAGGAAGCTGTCAGCCTTGTCCAAGAGTTAGTAGACAAAAGTGTGTCTGTGGCAAAAAAGTAGCT
GAAAGAAGTTGTGCAAGTCCACTATGGCACTGTGATCAAGTATGTGGAAAAACACTGCCATGTGGTAATC
ACACATGTGAGCAAGTTTGCCATGTTGGTGCTTGTGGAGAATGTCCTCGATCTGGGAAAAGGTTCTGTCC
ATGTCAGAAATCAAAGTTTTCTTTGCCTTGTACAGAAGATGTACCAACTTGTGGAGACAGTTGTGACAAA
GTACTTGAATGCGGAATCCATAGATGTTCACAGCGTTGTCACCGAGGTCCCTGTGAAACATGTAGACAAG
AAGTGGAAAAGCATTGTCGCTGTGGAAAGCATACAAAACGAATGCCTTGTCATAAACCTTATCTGTGTGA
AACTAAGTGTGTTAAGATGCGTGACTGTCAGAAGCATCAATGTAGAAGAAAGTGTTGCCCTGGAAACTGT
CCACCTTGTGATCAAAACTGTGGACGGACTTTAGGATGTAGAAACCATAAGTGTCCATCTGTCTGTCACA
GAGGCAGTTGCTATCCCTGCCCAGAAACCGTAGATGTGAAGTGTAATTGTGGCAATACAAAGGTGACAGT
GCCCTGTGGCCGAGAACGTACCACAAGACCACCCAAGTGCAAGGAGCAATGCAGTCGACCACCAACTTGT
CATCATACAAGTCAAGAAAAACATCGCTGTCACTTTGGTTCTTGTCCACCATGTCATCAACCTTGCCAAA
AAGTTTTGGAGAAATGTGGTCACTTGTGTCCTGCTCCGTGTCATGATCAAGCATTAATAAAGCAGACTGG
CAGGCACCAGCCTACAGGCCCTTGGGAACAGCCTTCTGAGCCAGCATTTATTCAGACTGCATTACCGTGT
CCTCCATGTCAAGTTCCTATTCCTATGGAATGTCTTGGGAAACATGAGGTGAGTCCACTACCATGCCATG
CTGTAGGACCCTACTCTTGTAAAAGAGTTTGTGGAAGAATCTTGGATTGTCAGAATCACACATGTATGAA
AGAATGCCACAAAGTAACCAAAACTGATGGCTGCACTGGAAAAAACAAGGCTGGCCCAGAATGCCTTCAT
TGTGAGGAAGGGTGCTCCAAGTCACGGCCACTAGGTTGTCTTCACCCATGTATTTTGCGATGTCACCCTG
GAGAATGTCCACCTTGTGTTCAGATGCTTAGAATAAAATGTCACTGTAAGATCACAAGCCTGTATGTGGA
ATGTAGAAAAATAACCACAGCTGATGTAAATGAAAAGAACCTCCTCAGTTGTTGCAAAAATCAGTGCCCT
AAAGAGCTTCCTTGTGGTCATAGATGCAAAGAGATGTGTCATCCTGGTGAATGTCCCTTTAACTGCAACC
AGAAGGTAAAACTTAGATGTCCTTGTAAAAGAATAAAAAAGGAATTGCAGTGCAACAAAGTACGTGAAAA
TCAGGTTTCAATAGAATGTGACACAACGTGCAAGGAAATGAAGCGGAAAGCATCTGAGATAAAAGAAGCA
GAAGCCAAAGCTGCTCTTGAAGAAGAAAAACGAAGACAACAGGCTGAACTAGAAGCTTTTGAAAACAGAC
TGAAGGGTCGTCGGAAGAAGAACAGGAAAAGAGATGAAGTGGCAGTTGAGCTATCACTATGGCAAAAACA
TAAATATTATCTCATTTCAGTGTGTGGAGTTGTGGTTGTAGTGTTTGCCTGGTACATCACCCATGATGTC
AATTAA

Translation (911 aa):
MEASWRQVAGGRGRSRGRATAAPSGNGVHLRGAGGGREKGSVGAVPSGTSPGGVATTAAAGSRHSPAGSQ
ALQTTAASELMSQKKFEEIKKANQAAARKLVEEQFSSSSEEGDEDFEGKQGKILANTFITYTTQTDGDTR
ELERTKQYVNEAFQAGAMTCLICIASVKRNQAVWSCSGCFCIFHMPCIQKWAKDSQFLVSSVTDDDFGKK
DCPWPCPKCRFEYKRSETPSRYYCYCGKVEDPPLDPWLVPHSCGQVCEREFKPPCGHKCLLLCHPGPCPP
CPKMVTTTCYCKKAKPIPRRCSAKEWSCQLPCGQKLLCGQHKCENPCHAGSCQPCPRVSRQKCVCGKKVA
ERSCASPLWHCDQVCGKTLPCGNHTCEQVCHVGACGECPRSGKRFCPCQKSKFSLPCTEDVPTCGDSCDK
VLECGIHRCSQRCHRGPCETCRQEVEKHCRCGKHTKRMPCHKPYLCETKCVKMRDCQKHQCRRKCCPGNC
PPCDQNCGRTLGCRNHKCPSVCHRGSCYPCPETVDVKCNCGNTKVTVPCGRERTTRPPKCKEQCSRPPTC
HHTSQEKHRCHFGSCPPCHQPCQKVLEKCGHLCPAPCHDQALIKQTGRHQPTGPWEQPSEPAFIQTALPC
PPCQVPIPMECLGKHEVSPLPCHAVGPYSCKRVCGRILDCQNHTCMKECHKVTKTDGCTGKNKAGPECLH
CEEGCSKSRPLGCLHPCILRCHPGECPPCVQMLRIKCHCKITSLYVECRKITTADVNEKNLLSCCKNQCP
KELPCGHRCKEMCHPGECPFNCNQKVKLRCPCKRIKKELQCNKVRENQVSIECDTTCKEMKRKASEIKEA
EAKAALEEEKRRQQAELEAFENRLKGRRKKNRKRDEVAVELSLWQKHKYYLISVCGVVVVVFAWYITHDV
N


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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