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Report for CCDS22126.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22126.1 Public Mus musculus 8 Agpat5 23 108 98 CCDS HistoryNCBI Gene:52123Re-query CCDS DB by CCDS ID:22126.1See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 22126.1
The coding region has been updated to represent a CDS sequence that is better supported by available transcript data and the reference genome sequence. The protein length is unchanged.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22126.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000149565.7 ENSMUSP00000117025.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149565.7Link to Ensembl Protein Viewer:ENSMUSP00000117025.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000149565Re-query CCDS DB by Protein ID:ENSMUSP00000117025
Original member Current member NCBI NM_026792.3 NP_081068.1 Accepted alive Link to Nucleotide Sequence:NM_026792.3Link to Protein Sequence:NP_081068.1Re-query CCDS DB by Nucleotide ID:NM_026792Re-query CCDS DB by Protein ID:NP_081068Link to BLAST:NP_081068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081068.1 365 Q9D1E8 365 100% 0 0

Chromosomal Locations for CCDS 22126.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 18846560 18846778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18861477 18861546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18868893 18869008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18870838 18870927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18876040 18876130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18878007 18878168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18879605 18879728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18881738 18881963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGCTGCTGTCCCTGGTGCTCCACACGTACTCTATGCGCTACCTGCTCCCCAGCGTCCTGTTGCTGGGCT
CGGCGCCCACCTACCTGCTGGCCTGGACGCTGTGGCGGGTGCTCTCCGCGCTGATGCCCGCCCGCCTGTA
CCAGCGCGTGGACGACCGGCTTTACTGCGTCTACCAGAACATGGTGCTCTTCTTCTTCGAGAACTACACC
GGGGTCCAGATATTGCTATATGGAGATTTGCCAAAAAATAAAGAAAATGTAATATATCTAGCGAATCATC
AAAGCACAGTTGACTGGATTGTTGCGGACATGCTGGCTGCCAGACAGGATGCCCTAGGACATGTGCGCTA
CGTACTGAAAGACAAGTTAAAATGGCTTCCGCTGTATGGGTTCTACTTTGCTCAGCATGGAGGAATTTAT
GTAAAACGAAGTGCCAAATTTAATGATAAAGAAATGAGAAGCAAGCTGCAGAGCTATGTGAACGCAGGAA
CACCGATGTATCTTGTGATTTTCCCAGAGGGAACAAGGTATAATGCAACATACACAAAACTCCTTTCAGC
CAGTCAGGCATTTGCTGCTCAGCGGGGCCTTGCAGTATTAAAACACGTACTGACACCAAGAATAAAGGCC
ACTCACGTTGCTTTTGATTCTATGAAGAGTCATTTAGATGCAATTTATGATGTCACAGTGGTTTATGAAG
GGAATGAGAAAGGTTCAGGAAAATACTCAAATCCACCATCCATGACTGAGTTTCTCTGCAAACAGTGCCC
AAAACTTCATATTCACTTTGATCGTATAGACAGAAATGAAGTTCCAGAGGAACAAGAACACATGAAAAAG
TGGCTTCATGAGCGCTTTGAGATAAAAGATAGGTTGCTCATAGAGTTCTATGATTCACCAGATCCAGAAA
GAAGAAACAAATTTCCTGGGAAAAGTGTTCATTCCAGACTAAGTGTGAAGAAGACTTTACCTTCAGTGTT
GATCTTGGGGAGTTTGACTGCTGTCATGCTGATGACGGAGTCCGGAAGGAAACTGTACATGGGCACCTGG
TTGTATGGAACCCTCCTTGGCTGCCTGTGGTTTGTTATTAAAGCATAA

Translation (365 aa):
MLLSLVLHTYSMRYLLPSVLLLGSAPTYLLAWTLWRVLSALMPARLYQRVDDRLYCVYQNMVLFFFENYT
GVQILLYGDLPKNKENVIYLANHQSTVDWIVADMLAARQDALGHVRYVLKDKLKWLPLYGFYFAQHGGIY
VKRSAKFNDKEMRSKLQSYVNAGTPMYLVIFPEGTRYNATYTKLLSASQAFAAQRGLAVLKHVLTPRIKA
THVAFDSMKSHLDAIYDVTVVYEGNEKGSGKYSNPPSMTEFLCKQCPKLHIHFDRIDRNEVPEEQEHMKK
WLHERFEIKDRLLIEFYDSPDPERRNKFPGKSVHSRLSVKKTLPSVLILGSLTAVMLMTESGRKLYMGTW
LYGTLLGCLWFVIKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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