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Report for CCDS19136.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19136.1 Public Mus musculus 5 Actr3b 23 108 98 CCDS HistoryNCBI Gene:242894Re-query CCDS DB by CCDS ID:19136.1Re-query CCDS DB by GeneID:242894See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19136.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088244.5 ENSMUSP00000085578.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088244.5Link to Ensembl Protein Viewer:ENSMUSP00000085578.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000088244Re-query CCDS DB by Protein ID:ENSMUSP00000085578
Original member NCBI NM_001004365.2 NP_001004365.1 Updated not alive Link to Nucleotide Sequence:NM_001004365.2Link to Protein Sequence:NP_001004365.1Re-query CCDS DB by Nucleotide ID:NM_001004365Re-query CCDS DB by Protein ID:NP_001004365
Current member NCBI NM_001004365.3 NP_001004365.1 Accepted alive Link to Nucleotide Sequence:NM_001004365.3Link to Protein Sequence:NP_001004365.1Re-query CCDS DB by Nucleotide ID:NM_001004365Re-query CCDS DB by Protein ID:NP_001004365Link to BLAST:NP_001004365.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004365.1 418 Q641P0-1 418 100% 0 0

Chromosomal Locations for CCDS 19136.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 25760085 25760128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25798446 25798501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25809785 25809909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25811917 25812027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25822405 25822500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25825108 25825215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25829526 25829669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25831611 25831784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25832386 25832478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25848362 25848487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25849073 25849156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25849851 25849946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGCGGGCTCGCTGCCTCCCTGCGTGGTTGACTGCGGCACCGGGTACACCAAGCTTGGCTACGCAGGCA
ACACTGAACCACAGTTCATTATCCCGTCATGTATCGCCATCCGAGAATCTGCAAAGGTAGTTGATCAAGC
CCAAAGGAGGGTGTTGAGAGGAGTCGATGACCTTGATTTCTTCATAGGGGATGAAGCCATTGATAAACCT
ACCTACGCTACCAAGTGGCCTATACGACATGGCATCGTTGAAGACTGGGATCTTATGGAAAGGTTCATGG
AACAAGTGGTCTTTAAGTATCTTCGTGCTGAACCTGAGGACCACTACTTTTTAATGACAGAACCTCCACT
GAACACACCAGAAAACAGAGAGTACCTTGCAGAAATCATGTTTGAATCATTTAATGTACCAGGACTCTAC
ATTGCAGTACAGGCAGTGCTGGCTCTGGCAGCCTCTTGGACATCCCGGCAAGTTGGTGAACGCACACTAA
CGGGGATAGTTATAGACAGTGGAGACGGTGTCACCCATGTTATCCCGGTGGCAGAAGGTTATGTAATTGG
AAGCTGCATCAAACACATCCCAATTGCAGGTAGAGATATTACGTATTTCATTCAACAGCTGCTAAGGGAG
AGGGAGGTGGGAATCCCTCCTGAGCAGTCACTGGAAACCGCAAAAGCCATCAAGGAGAAGTACTGCTACA
TTTGCCCGGATATTGTCAGAGAATTTGCTAAGTATGACGTAGATCCTCGGAAGTGGATCAAACAGTACAC
AGGGATCAATGCCATCAACCAGAAGAAGTTCATTATAGATGTTGGTTATGAAAGGTTCCTGGGACCAGAA
ATATTCTTTCACCCTGAGTTTGCCAACCCAGACTTTATGGAGTCCATCTCGGATGTTGTCGATGAAGTCA
TACAGAGCTGTCCCATAGATGTGCGCCGGCCGCTGTATAAGAACGTCGTTCTTTCTGGAGGCTCCACAAT
GTTCAGAGATTTTGGACGTCGTCTGCAGAGAGATTTGAAAAGAGTGGTGGACGCCAGGTTAAAGCTGAGC
CAAGAGCTCAGTGGAGGCAGGATAAAGCCTAAACCTGTGGAGGTGCAGGTGGTCACGCACCACATGCAGC
GCTATGCCGTGTGGTTTGGAGGCTCGATGCTAGCCTCAACTCCGGAGTTCTTTCAGGTCTGTCACACCAA
GAAGGACTATGAGGAATACGGCCCAAGCATCTGCCGCCACAACCCTGTCTTCGGAGTCATGTCCTAG

Translation (418 aa):
MAGSLPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKP
TYATKWPIRHGIVEDWDLMERFMEQVVFKYLRAEPEDHYFLMTEPPLNTPENREYLAEIMFESFNVPGLY
IAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRE
REVGIPPEQSLETAKAIKEKYCYICPDIVREFAKYDVDPRKWIKQYTGINAINQKKFIIDVGYERFLGPE
IFFHPEFANPDFMESISDVVDEVIQSCPIDVRRPLYKNVVLSGGSTMFRDFGRRLQRDLKRVVDARLKLS
QELSGGRIKPKPVEVQVVTHHMQRYAVWFGGSMLASTPEFFQVCHTKKDYEEYGPSICRHNPVFGVMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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