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Report for CCDS15202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15202.1 Public Mus musculus 1 Macir 23 108 98 CCDS HistoryNCBI Gene:52392Re-query CCDS DB by CCDS ID:15202.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15202.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053033.13 ENSMUSP00000051034.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053033.13Link to Ensembl Protein Viewer:ENSMUSP00000051034.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000053033Re-query CCDS DB by Protein ID:ENSMUSP00000051034
Original member Current member EBI ENSMUST00000149927.1 ENSMUSP00000121997.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149927.1Link to Ensembl Protein Viewer:ENSMUSP00000121997.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000149927Re-query CCDS DB by Protein ID:ENSMUSP00000121997
Original member Current member EBI ENSMUST00000153115.7 ENSMUSP00000138031.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153115.7Link to Ensembl Protein Viewer:ENSMUSP00000138031.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153115Re-query CCDS DB by Protein ID:ENSMUSP00000138031
Original member Current member NCBI NM_001355071.1 NP_001342000.1 Accepted alive Link to Nucleotide Sequence:NM_001355071.1Link to Protein Sequence:NP_001342000.1Re-query CCDS DB by Nucleotide ID:NM_001355071Re-query CCDS DB by Protein ID:NP_001342000Link to BLAST:NP_001342000.1
Original member Current member NCBI NM_001355072.1 NP_001342001.1 Accepted alive Link to Nucleotide Sequence:NM_001355072.1Link to Protein Sequence:NP_001342001.1Re-query CCDS DB by Nucleotide ID:NM_001355072Re-query CCDS DB by Protein ID:NP_001342001Link to BLAST:NP_001342001.1
Original member Current member NCBI NM_001355073.1 NP_001342002.1 Accepted alive Link to Nucleotide Sequence:NM_001355073.1Link to Protein Sequence:NP_001342002.1Re-query CCDS DB by Nucleotide ID:NM_001355073Re-query CCDS DB by Protein ID:NP_001342002Link to BLAST:NP_001342002.1
Original member Current member NCBI NM_001355074.1 NP_001342003.1 Accepted alive Link to Nucleotide Sequence:NM_001355074.1Link to Protein Sequence:NP_001342003.1Re-query CCDS DB by Nucleotide ID:NM_001355074Re-query CCDS DB by Protein ID:NP_001342003Link to BLAST:NP_001342003.1
Original member Current member NCBI NM_133825.3 NP_598586.1 Accepted alive Link to Nucleotide Sequence:NM_133825.3Link to Protein Sequence:NP_598586.1Re-query CCDS DB by Nucleotide ID:NM_133825Re-query CCDS DB by Protein ID:NP_598586Link to BLAST:NP_598586.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342000.1 207 Q8VEB3 207 100% 0 0
NP_001342001.1 207 Q8VEB3 207 100% 0 0
NP_001342002.1 207 Q8VEB3 207 100% 0 0
NP_001342003.1 207 Q8VEB3 207 100% 0 0
NP_598586.1 207 Q8VEB3 207 100% 0 0

Chromosomal Locations for CCDS 15202.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 97645715 97646338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGGAAGTAGATATAAATGGGGATTCCAGAAGTACCCTGACCACCCTGCCCTTGCCTGTGGCTGAGGGAA
GCTCTCCAGGAAAAGCAGAGGCAGAGAAACCCCGCTGCTCTAGCACACCCTGCTCGCCCATGCGCCGGAC
TGTGTCTGGTTATCAGATCCTCCACATGGACTCTAACTACTTGGTTGGCTTCACCACTGGTGAGGAACTC
CTGAAGTTAGCCCAGAAGTGCACAGGAGGGGAAGACAGCAAGGGAGAAGCCATGCCCGCCTTGCGCGCTA
AACAGCTGGACACGGGACTCGCGCGTTCCTCTCGTCTGTATAAAACTAGAAGTAGGTACTATCAGCCATA
TGAGATCCCAGCGGTTAATGGCAGGAGGCGAAGGCGGATGCCCAGCTCAGGAGACAAGTGCACCAAACCC
TTACCTTATGAACCTTATAAGGCCCTCCATGGGCCCTTGCCTCTATGTCTTCTTAAAGGTAAGAGGGCTC
ACTCCAAATCTCTGGACTACCTCAATCTAGATAAAATGAACATCAAGGAGCCAGCTGACACGGAAGTGCT
ACAGTACCAGCTTCAGCACCTGACCCTCCGAGGGGACCGAGTGTTTGCTAGAAACAATACATGA

Translation (207 aa):
MEVDINGDSRSTLTTLPLPVAEGSSPGKAEAEKPRCSSTPCSPMRRTVSGYQILHMDSNYLVGFTTGEEL
LKLAQKCTGGEDSKGEAMPALRAKQLDTGLARSSRLYKTRSRYYQPYEIPAVNGRRRRRMPSSGDKCTKP
LPYEPYKALHGPLPLCLLKGKRAHSKSLDYLNLDKMNIKEPADTEVLQYQLQHLTLRGDRVFARNNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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