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Report for CCDS36934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36934.1 Public Mus musculus 14 Dhrs1 23 108 98 CCDS HistoryNCBI Gene:52585Re-query CCDS DB by CCDS ID:36934.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36934.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002403.9 ENSMUSP00000002403.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002403.9Link to Ensembl Protein Viewer:ENSMUSP00000002403.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000002403Re-query CCDS DB by Protein ID:ENSMUSP00000002403
Original member Current member NCBI NM_026819.3 NP_081095.2 Accepted alive Link to Nucleotide Sequence:NM_026819.3Link to Protein Sequence:NP_081095.2Re-query CCDS DB by Nucleotide ID:NM_026819Re-query CCDS DB by Protein ID:NP_081095Link to BLAST:NP_081095.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081095.2 313 Q99L04 313 100% 0 0

Chromosomal Locations for CCDS 36934.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55739284 55739420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55739552 55739632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55739936 55740005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55740727 55740873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55741183 55741315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55743454 55743533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55743658 55743801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55744918 55745067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGTAGCGCCTATGAAGGGCCAAGTGTGTGTGGTAACTGGTGCCTCCAGGGGTATTGGCCGTGGCATTG
CCTTACAGCTTTGCAAAGCAGGTGCCACAGTTTACATTACCGGCCGCCATCTGGATACGCTTAGAGCTAC
TGCCCAGGAGGCACAGTCCCTCGGGGGCCGGTGTGTACCCGTGGTGTGTGATTCAAGCCAGGAGAGTGAA
GTGAAAAGCCTGTTCGAGCAAGTAGATCGGGAACAGAAAGGGCGGCTAGATGTTCTGGTCAATAATGCCT
ATGCTGGCGTCCAGGCAATCCTGAACACCACCAACAAGTCTTTCTGGGAAGTGCCTGCCTCCATTTGGGA
TGACATAAACAATGTTGGACTCAGAGGCCACTACTTATGCTCTGTGTATGGGGCACGGCTGATGGTGCCA
GCTGGCAAAGGACTCATCGTGATTGTCTCCTCCCCTGGGGGGCTGCAGCATATGTTCAATGTCCCTTATG
GTGTGGGCAAAGCTGCGTGTGACAGACTGGCTGCTGACTGTGCCCATGAGCTACGGCGTCACGGAGTCAG
CTACGTGTCTCTGTGGCCAGGGCTGGTGCAAACAGAAATGGTGAAGGAGTTTATGGCAAAAGAGGATACT
CCTGAGGACCCTCTATTTAAGAAGATGAAACCAGATTTCTCATCAGCCGAAAGTCCAGAAATGAGTGGCA
AGTGTGTGGTGGCCTTGGCAACAGACCCCAATATCCTGAACTTGAGCGGGAAGGTGCTGCCGTCCTGTGA
CCTTGCTCGGCGCTATGGCCTTAAGGATATCGATGGCCGCCCTGTCAAAGACTACTTTTCTCTGGGCTAT
GCCCTCTCACAAGTCTCCAGCCTGGGATGGCTGAACTCCTTCTTGCCTGGCTTCCTCCGTGTACCCAAGT
GGGTCGTCACCCTCTACAACAGCAAATTCTAA

Translation (313 aa):
MVAPMKGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRATAQEAQSLGGRCVPVVCDSSQESE
VKSLFEQVDREQKGRLDVLVNNAYAGVQAILNTTNKSFWEVPASIWDDINNVGLRGHYLCSVYGARLMVP
AGKGLIVIVSSPGGLQHMFNVPYGVGKAACDRLAADCAHELRRHGVSYVSLWPGLVQTEMVKEFMAKEDT
PEDPLFKKMKPDFSSAESPEMSGKCVVALATDPNILNLSGKVLPSCDLARRYGLKDIDGRPVKDYFSLGY
ALSQVSSLGWLNSFLPGFLRVPKWVVTLYNSKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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