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Report for CCDS50950.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50950.1 Public Mus musculus 3 Slc25a44 23 108 98 CCDS HistoryNCBI Gene:229517Re-query CCDS DB by CCDS ID:50950.1Re-query CCDS DB by GeneID:229517See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50950.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057935.8 ENSMUSP00000057871.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057935.8Link to Ensembl Protein Viewer:ENSMUSP00000057871.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000057935Re-query CCDS DB by Protein ID:ENSMUSP00000057871
Original member Current member NCBI NM_178696.5 NP_848811.2 Accepted alive Link to Nucleotide Sequence:NM_178696.5Link to Protein Sequence:NP_848811.2Re-query CCDS DB by Nucleotide ID:NM_178696Re-query CCDS DB by Protein ID:NP_848811Link to BLAST:NP_848811.2

Chromosomal Locations for CCDS 50950.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88412706 88412897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88415988 88416115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88420501 88421138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88424728 88424771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGCCCGGGGACTCTGAATTGGCCGTGCAAGAGCCTGACAGAAGGTCTCCGGGCACAATGGAGGACAAAC
GGAACATCCAGATCATCGAGTGGGAGCACCTGGACAAGAAGAAGTTCTATGTGTTTGGTGTTGCTATGAC
AATGATGATCAGGGTCAGCGTGTACCCGTTCACCCTCATCCGCACCCGCCTGCAGGTCCAGAAGGGCAAG
AGCCTCTACCACGGGACCTTCGATGCCTTTGTCAAGATCCTGCGAGCAGATGGAGTGGCGGGCCTCTACC
GGGGGTTCCTGGTCAACACCTTCACACTCATCTCCGGCCAGTGCTATGTCACCACTTACGAGCTCACCCG
GAAGTTTGTGGCAGACTACAGCCAGAGTAACACAGTCAAATCACTCGTAGCCGGGGGCTCGGCCTCCCTT
GTGGCCCAGAGCATCACGGTGCCGATCGATGTTGTCTCCCAACATCTGATGATGCAGCGGAAGGGTGAGA
AAATGGGTCGCTTCCAAGTGCACGGGAACCTAGAGGGACAAGGGGTGATTGCCTTTGGCCAGACTAAGGA
CATCATCAGGCAGATCCTTCGGGCTGACGGTCTCCGAGGCTTCTACCGGGGCTATGTGGCCTCGCTGCTA
ACGTACATCCCAAACAGTGCTGTCTGGTGGCCCTTCTACCACTTCTATGCAGAGCAGCTGTCGCGCCTGT
GCCCTCAGGAGTGCCCTCACATTGTCTTTCAAGCCATCTCTGGGCCCCTGGCTGCAGCCACTGCCTCCAT
CCTCACCAATCCCATGGATGTCATCAGAACCCGTGTGCAGGTTGAAGGCAAGAGCTCCATCGTCCTGACC
TTCAGGCAGCTGATGGCAGAGGAGGGGCCTTGGGGCCTCATGAAGGGCCTCTCGGCAAGAATCATCTCGG
CTACACCCTCCACCATCGTCATCGTGGTGGGCTACGAGAGCCTCAAGAAGCTCAGCCTGCGACCTGAGCT
GGTGGACTCGAGACACTGGTAG

Translation (333 aa):
MPGDSELAVQEPDRRSPGTMEDKRNIQIIEWEHLDKKKFYVFGVAMTMMIRVSVYPFTLIRTRLQVQKGK
SLYHGTFDAFVKILRADGVAGLYRGFLVNTFTLISGQCYVTTYELTRKFVADYSQSNTVKSLVAGGSASL
VAQSITVPIDVVSQHLMMQRKGEKMGRFQVHGNLEGQGVIAFGQTKDIIRQILRADGLRGFYRGYVASLL
TYIPNSAVWWPFYHFYAEQLSRLCPQECPHIVFQAISGPLAAATASILTNPMDVIRTRVQVEGKSSIVLT
FRQLMAEEGPWGLMKGLSARIISATPSTIVIVVGYESLKKLSLRPELVDSRHW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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