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Report for CCDS12371.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12371.1 Public Homo sapiens 19 PIK3R2 24 110 108 CCDS HistoryNCBI Gene:5296Re-query CCDS DB by CCDS ID:12371.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12371.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000222254.13 ENSP00000222254.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000222254.13Link to Ensembl Protein Viewer:ENSP00000222254.6Re-query CCDS DB by Nucleotide ID:ENST00000222254Re-query CCDS DB by Protein ID:ENSP00000222254
Original member Current member EBI ENST00000593731.1 ENSP00000471914.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000593731.1Link to Ensembl Protein Viewer:ENSP00000471914.1Re-query CCDS DB by Nucleotide ID:ENST00000593731Re-query CCDS DB by Protein ID:ENSP00000471914
Original member Current member NCBI NM_005027.4 NP_005018.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005027.4Link to Protein Sequence:NP_005018.2Re-query CCDS DB by Nucleotide ID:NM_005027Re-query CCDS DB by Protein ID:NP_005018Link to BLAST:NP_005018.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005018.2 728 O00459 728 100% 0 0

Chromosomal Locations for CCDS 12371.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18155880 18156201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18160471 18160563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18160919 18160969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18161054 18161185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18161279 18161495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18161966 18162051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18162202 18162310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18162408 18162506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18162967 18163147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18163263 18163388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18166160 18166302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18167130 18167306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18168475 18168546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18168726 18168896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18169087 18169294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2187 nt):
ATGGCGGGCCCTGAGGGCTTCCAGTACCGCGCTCTGTACCCGTTCCGCCGGGAGCGGCCGGAGGACCTGG
AGCTGCTGCCCGGCGACGTGCTGGTAGTGAGCCGGGCGGCCTTGCAGGCGCTGGGCGTGGCCGAGGGTGG
CGAGCGCTGCCCACAGAGCGTGGGCTGGATGCCCGGCCTCAACGAGCGCACACGGCAGCGAGGTGACTTC
CCTGGCACCTATGTGGAGTTCCTGGGGCCCGTGGCCCTGGCCCGGCCCGGCCCTCGCCCACGGGGCCCCC
GCCCACTGCCCGCCAGGCCCCGTGATGGGGCCCCTGAGCCAGGCCTCACACTCCCCGACTTGCCCGAGCA
GTTCTCCCCACCTGATGTGGCTCCCCCTCTTCTGGTGAAGCTTGTGGAGGCCATTGAAAGGACAGGGCTG
GACAGCGAATCTCACTACCGCCCGGAGCTGCCCGCACCGCGTACAGACTGGTCCCTGAGCGACGTGGATC
AGTGGGACACGGCAGCCCTGGCTGACGGCATTAAGAGCTTCCTGCTGGCACTGCCCGCGCCGCTCGTGAC
CCCCGAGGCCTCGGCCGAGGCGCGCCGGGCCCTGCGGGAGGCCGCGGGGCCCGTGGGGCCGGCGCTGGAG
CCACCGACGCTGCCGCTGCACCGCGCGCTCACGCTGCGCTTCCTGCTCCAGCACCTGGGCCGCGTGGCCA
GCCGCGCCCCGGCCCTGGGTCCCGCGGTCCGGGCCCTGGGCGCCACCTTTGGGCCGCTGCTGCTGCGCGC
GCCGCCGCCGCCGTCCTCGCCGCCGCCAGGGGGCGCTCCCGACGGGAGTGAGCCCAGCCCTGACTTCCCG
GCGCTGCTGGTGGAGAAGCTGCTTCAGGAACACTTGGAAGAGCAGGAGGTTGCGCCCCCAGCGCTGCCGC
CTAAACCCCCCAAGGCAAAGCCGGCCTCCACAGTCCTGGCCAATGGAGGGAGCCCACCCTCCCTGCAGGA
TGCTGAGTGGTACTGGGGGGACATTTCAAGGGAGGAGGTGAACGAGAAACTCCGGGACACTCCCGATGGC
ACCTTCCTAGTCCGAGATGCTTCTAGCAAGATCCAGGGCGAGTACACGCTGACCCTCAGGAAAGGCGGGA
ACAATAAGCTGATCAAGGTCTTCCACCGAGATGGGCACTATGGCTTCTCAGAGCCACTCACCTTCTGCTC
CGTTGTGGACCTCATCAATCACTACCGCCACGAGTCTCTGGCCCAGTACAATGCCAAGCTGGACACACGG
CTCCTCTACCCTGTGTCCAAATACCAGCAGGACCAGATTGTCAAGGAGGACAGCGTGGAGGCAGTGGGCG
CCCAGCTTAAGGTCTATCACCAGCAGTACCAGGACAAGAGCCGCGAGTATGACCAGCTTTATGAAGAGTA
CACACGGACCTCCCAGGAGCTGCAGATGAAGCGTACTGCAATTGAGGCCTTCAATGAGACTATCAAGATC
TTTGAAGAGCAGGGCCAGACTCAAGAGAAATGCAGCAAGGAATACCTGGAGCGCTTCCGGCGTGAGGGCA
ACGAGAAAGAGATGCAAAGGATCCTGCTGAACTCCGAGCGGCTCAAGTCCCGCATTGCCGAGATCCATGA
GAGCCGCACGAAGCTGGAGCAGCAGCTGCGGGCCCAGGCCTCGGACAACAGAGAGATCGACAAGCGCATG
AACAGCCTCAAGCCGGACCTCATGCAGCTGCGCAAGATCCGAGACCAGTACCTCGTGTGGCTCACCCAGA
AAGGCGCCCGGCAGAAGAAAATCAACGAGTGGCTGGGGATTAAAAATGAGACTGAGGACCAGTACGCACT
CATGGAGGACGAGGACGATCTCCCGCACCACGAGGAACGCACTTGGTACGTGGGCAAGATCAACCGCACG
CAGGCAGAGGAGATGCTGAGTGGCAAGCGGGATGGCACCTTCCTCATCCGCGAGAGCAGCCAGCGGGGCT
GCTACGCCTGCTCCGTGGTAGTGGACGGCGACACCAAGCACTGCGTCATCTACCGCACGGCCACCGGCTT
CGGCTTCGCGGAGCCCTACAACCTGTACGGGTCGCTGAAGGAGCTGGTGCTGCACTACCAGCACGCCTCG
CTGGTGCAGCACAACGACGCGCTCACCGTCACCCTGGCGCACCCAGTGCGCGCCCCGGGCCCCGGCCCGC
CGCCTGCCGCCCGCTGA

Translation (728 aa):
MAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDF
PGTYVEFLGPVALARPGPRPRGPRPLPARPRDGAPEPGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGL
DSESHYRPELPAPRTDWSLSDVDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALREAAGPVGPALE
PPTLPLHRALTLRFLLQHLGRVASRAPALGPAVRALGATFGPLLLRAPPPPSSPPPGGAPDGSEPSPDFP
ALLVEKLLQEHLEEQEVAPPALPPKPPKAKPASTVLANGGSPPSLQDAEWYWGDISREEVNEKLRDTPDG
TFLVRDASSKIQGEYTLTLRKGGNNKLIKVFHRDGHYGFSEPLTFCSVVDLINHYRHESLAQYNAKLDTR
LLYPVSKYQQDQIVKEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKI
FEEQGQTQEKCSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQQLRAQASDNREIDKRM
NSLKPDLMQLRKIRDQYLVWLTQKGARQKKINEWLGIKNETEDQYALMEDEDDLPHHEERTWYVGKINRT
QAEEMLSGKRDGTFLIRESSQRGCYACSVVVDGDTKHCVIYRTATGFGFAEPYNLYGSLKELVLHYQHAS
LVQHNDALTVTLAHPVRAPGPGPPPAAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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