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Report for CCDS1635.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1635.1 Public Homo sapiens 1 GCSAML 24 110 108 CCDS HistoryNCBI Gene:148823Re-query CCDS DB by CCDS ID:1635.1Re-query CCDS DB by GeneID:148823See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1635.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366488.5 ENSP00000355444.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366488.5Link to Ensembl Protein Viewer:ENSP00000355444.4Re-query CCDS DB by Nucleotide ID:ENST00000366488Re-query CCDS DB by Protein ID:ENSP00000355444
Original member Current member EBI ENST00000536561.5 ENSP00000446460.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536561.5Link to Ensembl Protein Viewer:ENSP00000446460.2Re-query CCDS DB by Nucleotide ID:ENST00000536561Re-query CCDS DB by Protein ID:ENSP00000446460
Original member Current member NCBI NM_001281853.1 NP_001268782.1 Accepted alive Link to Nucleotide Sequence:NM_001281853.1Link to Protein Sequence:NP_001268782.1Re-query CCDS DB by Nucleotide ID:NM_001281853Re-query CCDS DB by Protein ID:NP_001268782Link to BLAST:NP_001268782.1
Original member Current member NCBI NM_145278.5 NP_660321.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145278.5Link to Protein Sequence:NP_660321.1Re-query CCDS DB by Nucleotide ID:NM_145278Re-query CCDS DB by Protein ID:NP_660321Link to BLAST:NP_660321.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268782.1 135 Q5JQS6-1 135 100% 0 0
NP_660321.1 135 Q5JQS6-1 135 100% 0 0

Chromosomal Locations for CCDS 1635.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 247549192 247549220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 247556407 247556466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 247563590 247563639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 247565931 247565959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 247574143 247574382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (408 nt):
ATGGGAAATTATCTCCTGCGAAAACTCAGTTGCCTGGGAGAGAATCAAAAGAAGCCCAAGAAAGGAAACC
CAGATGAGGAAAGAAAACGGCAGGAAATGACTACATTTGAAAGAAAACTTCAAGATCAAGATAAGAAAAG
CCAAGAAGTTTCATCCACTTCTAATCAGGAAAACGAGAATGGCAGTGGTTCTGAAGAAGTGTGCTACACT
GTCATTAATCACATCCCCCATCAGAGATCCTCCCTGAGCTCCAATGATGATGGCTATGAGAACATTGACT
CCCTCACAAGGAAAGTGAGACAGTTTAGAGAAAGGTCAGAGACAGAATATGCCCTTCTTAGGACTTCTGT
TAGTAGGCCTTGTTCCTGCACCCATGAGCATGATTATGAAGTTGTGTTTCCACACTAA

Translation (135 aa):
MGNYLLRKLSCLGENQKKPKKGNPDEERKRQEMTTFERKLQDQDKKSQEVSSTSNQENENGSGSEEVCYT
VINHIPHQRSSLSSNDDGYENIDSLTRKVRQFRERSETEYALLRTSVSRPCSCTHEHDYEVVFPH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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