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Report for CCDS85580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85580.1 Public Mus musculus 8 Rbl2 23 108 98 CCDS HistoryNCBI Gene:19651Re-query CCDS DB by CCDS ID:85580.1Re-query CCDS DB by GeneID:19651See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85580.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000209518.1 ENSMUSP00000147327.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209518.1Link to Ensembl Protein Viewer:ENSMUSP00000147327.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209518Re-query CCDS DB by Protein ID:ENSMUSP00000147327
Original member Current member NCBI NM_001282001.1 NP_001268930.1 Accepted alive Link to Nucleotide Sequence:NM_001282001.1Link to Protein Sequence:NP_001268930.1Re-query CCDS DB by Nucleotide ID:NM_001282001Re-query CCDS DB by Protein ID:NP_001268930Link to BLAST:NP_001268930.1

Chromosomal Locations for CCDS 85580.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 91070176 91070406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91074143 91074273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91075915 91076115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91078880 91078944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91083299 91083427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91085433 91085593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91085675 91085739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91086983 91087169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91090055 91090221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91095549 91095658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91096794 91096867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91100040 91100177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91101348 91101512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91102198 91102309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91106280 91106546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91106703 91106983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91107058 91107234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91112518 91112589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91113985 91114084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91115041 91115249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91115662 91115826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91122276 91122446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3378 nt):
ATGGCATCTGGAGGCAACCAGTCGCCACCGCCTCCTCCAGCTGCTGCAGCCAGCTCGGAGGAAGAGGAGG
AGGATGGCGACGCCGCGGATCGCGCGCAGCCCGCGGGGTCCCCGAGCCATCAGATCCAGCAGCGGTTCGA
GGAGCTGTGCAGCCGCCTCAACATGGACGAGGCGGCGCGCGCCGAGGCCTGGAGCAGCTACCGCAGCATG
AGCGAGAGCTACACGCTGGAGGGAAATGACCTTCATTGGTTAGCATGTGCCTTATATGTGGCTTGCAGAA
AATCTGTTCCAACTGTGAGCAAAGGGACCGCTGAAGGAAACTATGTATCTTTAACCAGAATCCTTCGCTG
TTCGGAGCAGAGCCTAATTGAATTTTTTAACAAGATGAAGAAGTGGGAAGACATGGCAAATCTGCCCCCA
CATTTCCGAGAACGTACTGAAAGATTAGAAAGAAACTTCACTGTTTCTGCTGTGATTTTTAAGAAATATG
AACCCATTTTTCAAGACATTTTTAAATATCCCCAAGAAGAACAGCCTCGCCAGCAAAGAGGAAGAAAACA
GAGGCGACAGCCCTGTACCACATCAGAAATTTTCCATTTTTGCTGGGTGCTTTTTATATATGCGAAAGGG
AACTTCCCCATGATTAGCGATGATCTGGTCAATTCCTACCATCTTCTGCTGTGCGCATTAGATTTAGTCT
ATGGAAATGCCCTTCAGTGTTCTAACCGTAAAGAACTTGTGAACCCTAATTTTAAAGGCCTGTCCGAGGA
CTGTCACCCCAAGGACTCTAAAGCGTCCTCCGACCCGCCGTGTGTCATTGAGAAGCTGTGCTCCTTACAC
GACGGTCTAGTGTTGGAGGCCAAGGGGATAAAGGAACACTTCTGGAAACCCTATATTAGGAAACTGTTTG
AGAAAAAGCTTCTCAAGGGGAAGGAAGAAAATCTTACTGGCTTCCTGGAGCCCGGAAACTTTGGAGAGAG
TTTTAAGGCCGTTAATAAGGCATATGAAGAATACGTGTTAGCCGCTGGGAATCTGGATGAGCGCGTATTC
CTTGGTGAGGATGCTGAGGAGGAAGTTGGGACTCTGTCTCGGTGTCTAAGTGCTGCCTCAGGTACAGAGA
GTGCTGAACGGACGCAGATGAGAGACATCTTGCAGCAGCATCTTGACAAGTCTAAAGCACTTAGAGTCTG
CACACCACTGACTGGCGTGAGGTATGTTCAGGAGAACAGCCCGTGTGTGACTCCCGTCTCCACAGCTGCA
CACAGCCTGAGCCGTCTTCACACCATGCTGTCCGGCCTCAGGAATGCACCCAGTGAGAAGCTGGAGCGGA
TACTCAGGTCATGTTCCCGAGATCCAACTCAGGCTATCGCTGACAGATTGAAAGAAATGTACGAAATATA
TTCTCAGCATTTCCAGCCAGATGAGAATTTTAGTAATTGTGCTAAAGAAATGCTCTACTATAAAGTATTA
GAGTCTGTTATTGAGCAAGAACAAAAAAGATTGGGAGACATGGATTTATCTGGTGTTCTGGAGCATGACG
CATTCCACAGGTCACTCTTGGCCTGCTGCCTTGAGGTGGTCGCTTTTTCCCATAAGCCTCCTGGGAATTT
TCCATTTATTGCTGAAATATTTGATGTACCACATTATCATTTTTATAAGGTAATTGAAGTATTTATTAGA
GCAGAAGACGGTCTTTGCAGAGAAGTGGTCAAACACCTCAATCAGATTGAAGAACAAATTTTAGACCATT
TGGCATGGAAAACCAAGTCCCCACTGTGGGACAGAATTAGAGATAATGAAAACAGAGTCCCTACTTGTGA
AGAGGTCATGCCACCTCAAAACCTAGAGAGAACAGATGAAATTTACATCGCTGGCTCTCCCTTAACCCCG
AGAAGGGTGGGTGAAGTTCGTGCTGATGCTGGAGGACTTGGAAGAAGTATAACGTCTCCAACCACATTGT
ATGACAGGTACAGCTCCCCAACAGTCAGCACTACTAGAAGGCGGCTATTCGAGAATGATAGTCCCTCTGA
AGGAAGCACATCTGGGCGCATCCCCCCACAACCCCTAGTCAACGCTGTCCCCGTGCAGAATGTACCTGGG
GAGACTGTTTCTGTCACACCAGTTCCTGGACAGACCTTGGTCACCATGGCAACAGCCACTGTCACGGCCA
ACAATGGACAAACAGTGACCATTCCAGTCCAAGGTATTGCCAACGAAAATGGAGGGATAACCTTCTTCCC
AGTCCAAGTCAACGTTGGGGGCCAGGCCCAGGCTGTCGCTGGCTCTATCCAGCCCCTCAGTGCTCAAGCA
CTGGCTGGAAGTCTGAGTTCCCAACAGGTGACAGGAACCACTTTGCAAGTCCCTGGTCCGGTGGCCATTC
AACAGATTTCCCCTGGTGGACAACAGCAGAACCCAGGCCAGCCACTAACCAGCAGCAGTATCCGGCCGCG
GAAGACTAGCTCCTTAGCGCTCTTCTTTAGAAAGGTTTACTACTTAGCCGGTGTCCGCCTTCGAGATCTT
TGTATAAAACTAGATATTTCAGATGAACTGAGGAAAAAAATTTGGACCTGCTTTGAATTCTCTATAATCC
AGTGCACCGAACTTATGATGGACAGACATCTGGACCAGCTGTTGATGTGTGCCATTTATGTGATGGCAAA
GGTCACAAAAGAAGACAGGTCCTTCCAGAACATCATGCGTTGTTACAGAACTCAGCCACAGGCCCGGAGC
CAGGTGTACAGAAGTGTCTTGATAAAAGGGAAAAGAAGAAACTCTGGCAGCAGTGAGAGCAGAAGCCATC
AGAATTCTCCAACCGAACTAAATACAGACAGAGCCAGTAGAGATTCCAGCCCAGTGATGAGGTCAAACAG
CACCCTACCAGTTCCACAGCCCAGCAGTGCCCCTCCTACACCAACTCGACTCACGGGTGCCAGCAGTGAC
GTTGAAGAGGAGGAACGAGGAGACCTCATTCAGTTCTACAACAACATCTATAGGAAGCAAATCCAAGCGT
TTGCCATGAAGTACTCGCAGGCAAACGCGCAGACGGACACTCCTCCCCTCTCTCCCTATCCATTTGTAAG
AACAGGCTCCCCTCGCCGAGTACAGTTATCTCAAAGTCATCCTATCTACATTTCCCCACATAACAACGAA
GCAATGCCTTCTCCTCGAGAGAAGATTTTTTACTACTTCAGCAACAGCCCATCAAAGAGACTGAGGGAAA
TCAACAGTATGATACGGACAGGAGAGACTCCAACTAAAAAGAGAGGGATTCTCTTGGACGACGGAAGTGA
ATCACCTGCAAAAAGAATCTGCCCAGAGAATCACTCTGCTCTGTTACGTCGTCTCCAGGATGTGGCGAAT
GACCGAGGTTCACAGTGA

Translation (1125 aa):
MASGGNQSPPPPPAAAASSEEEEEDGDAADRAQPAGSPSHQIQQRFEELCSRLNMDEAARAEAWSSYRSM
SESYTLEGNDLHWLACALYVACRKSVPTVSKGTAEGNYVSLTRILRCSEQSLIEFFNKMKKWEDMANLPP
HFRERTERLERNFTVSAVIFKKYEPIFQDIFKYPQEEQPRQQRGRKQRRQPCTTSEIFHFCWVLFIYAKG
NFPMISDDLVNSYHLLLCALDLVYGNALQCSNRKELVNPNFKGLSEDCHPKDSKASSDPPCVIEKLCSLH
DGLVLEAKGIKEHFWKPYIRKLFEKKLLKGKEENLTGFLEPGNFGESFKAVNKAYEEYVLAAGNLDERVF
LGEDAEEEVGTLSRCLSAASGTESAERTQMRDILQQHLDKSKALRVCTPLTGVRYVQENSPCVTPVSTAA
HSLSRLHTMLSGLRNAPSEKLERILRSCSRDPTQAIADRLKEMYEIYSQHFQPDENFSNCAKEMLYYKVL
ESVIEQEQKRLGDMDLSGVLEHDAFHRSLLACCLEVVAFSHKPPGNFPFIAEIFDVPHYHFYKVIEVFIR
AEDGLCREVVKHLNQIEEQILDHLAWKTKSPLWDRIRDNENRVPTCEEVMPPQNLERTDEIYIAGSPLTP
RRVGEVRADAGGLGRSITSPTTLYDRYSSPTVSTTRRRLFENDSPSEGSTSGRIPPQPLVNAVPVQNVPG
ETVSVTPVPGQTLVTMATATVTANNGQTVTIPVQGIANENGGITFFPVQVNVGGQAQAVAGSIQPLSAQA
LAGSLSSQQVTGTTLQVPGPVAIQQISPGGQQQNPGQPLTSSSIRPRKTSSLALFFRKVYYLAGVRLRDL
CIKLDISDELRKKIWTCFEFSIIQCTELMMDRHLDQLLMCAIYVMAKVTKEDRSFQNIMRCYRTQPQARS
QVYRSVLIKGKRRNSGSSESRSHQNSPTELNTDRASRDSSPVMRSNSTLPVPQPSSAPPTPTRLTGASSD
VEEEERGDLIQFYNNIYRKQIQAFAMKYSQANAQTDTPPLSPYPFVRTGSPRRVQLSQSHPIYISPHNNE
AMPSPREKIFYYFSNSPSKRLREINSMIRTGETPTKKRGILLDDGSESPAKRICPENHSALLRRLQDVAN
DRGSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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