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Report for CCDS26008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26008.1 Public Mus musculus 12 Vti1b 23 108 98 CCDS HistoryNCBI Gene:53612Re-query CCDS DB by CCDS ID:26008.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26008.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055262.12 ENSMUSP00000057462.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055262.12Link to Ensembl Protein Viewer:ENSMUSP00000057462.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000055262Re-query CCDS DB by Protein ID:ENSMUSP00000057462
Original member Current member NCBI NM_016800.3 NP_058080.2 Accepted alive Link to Nucleotide Sequence:NM_016800.3Link to Protein Sequence:NP_058080.2Re-query CCDS DB by Nucleotide ID:NM_016800Re-query CCDS DB by Protein ID:NP_058080Link to BLAST:NP_058080.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058080.2 232 O88384 232 99.569% 0 1

Chromosomal Locations for CCDS 26008.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 79156475 79156571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79157848 79157909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79160409 79160582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79164948 79165139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79166351 79166409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79172220 79172334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGGCCGCCTCCGCCGCCTCCTCCGAGCATTTCGAGAAGCTGCACGAGATCTTCCGCGGCCTCCTTGAAG
ACTTACAAGGGGTGCCGGAGCGGCTGCTGGGGACCGCGGGGACAGAAGAGAAGAAGAAGCTGGTCAGAGA
TTTTGATGAAAAGCAACAGGAAGCAAATGAAACGTTGGCAGAGATGGAGGAAGAACTACGATATGCACCC
CTGACTTTCCGTAACCCCATGATGTCTAAGCTGAGAAACTACCGGAAGGACCTTGCTAAACTCCACCGTG
AGGTGAGAAGTACACCTCTGACAGCCGCTCCTGGAGGCCGAGGAGACCTGAAGTATGGCACGTATACCTT
GGAGAACGAGCATTTGAATCGACTACAGTCTCAAAGAGCATTACTCCTACAAGGCACTGAAAGCCTGAAC
CGGGCTACCCAAAGCATTGAGCGTTCTCATCGGATTGCCACAGAAACTGATCAAATTGGTACAGAAATCA
TAGAAGAGTTGGGGGAGCAACGAGACCAGTTGGAACGTACTAAGAGCAGACTGGTAAATACAAATGAAAA
TTTGAGCAAAAGCCGGAAGATTCTTCGCTCAATGTCCAGAAAAGTGATAACCAACAAGTTGCTGCTCTCC
GTCATCATCTTGCTGGAGCTAGCCATCCTGGTCGGTCTGGTGTATTACAAATTCTTTCGACACCATTGA

Translation (232 aa):
MAASAASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAP
LTFRNPMMSKLRNYRKDLAKLHREVRSTPLTAAPGGRGDLKYGTYTLENEHLNRLQSQRALLLQGTESLN
RATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLLS
VIILLELAILVGLVYYKFFRHH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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