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Report for CCDS24925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24925.1 Public Mus musculus 11 Cldn7 23 108 98 CCDS HistoryNCBI Gene:53624Re-query CCDS DB by CCDS ID:24925.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24925.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018713.12 ENSMUSP00000018713.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018713.12Link to Ensembl Protein Viewer:ENSMUSP00000018713.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000018713Re-query CCDS DB by Protein ID:ENSMUSP00000018713
Original member Current member EBI ENSMUST00000108597.7 ENSMUSP00000104238.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108597.7Link to Ensembl Protein Viewer:ENSMUSP00000104238.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108597Re-query CCDS DB by Protein ID:ENSMUSP00000104238
Original member Current member NCBI NM_001193619.1 NP_001180548.1 Accepted alive Link to Nucleotide Sequence:NM_001193619.1Link to Protein Sequence:NP_001180548.1Re-query CCDS DB by Nucleotide ID:NM_001193619Re-query CCDS DB by Protein ID:NP_001180548Link to BLAST:NP_001180548.1
Original member Current member NCBI NM_016887.6 NP_058583.1 Accepted alive Link to Nucleotide Sequence:NM_016887.6Link to Protein Sequence:NP_058583.1Re-query CCDS DB by Nucleotide ID:NM_016887Re-query CCDS DB by Protein ID:NP_058583Link to BLAST:NP_058583.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180548.1 211 Q9Z261 211 100% 0 0
NP_058583.1 211 Q9Z261 211 100% 0 0

Chromosomal Locations for CCDS 24925.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69965927 69966149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69966943 69967107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69967220 69967304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69967555 69967717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGGCCAACTCGGGCCTGCAACTGCTGGGCTTTTCAATGGCCATGCTTGGCTGGGTGGGCCTGATAGCGA
GCACTGCCATCCCTCAGTGGCAGATGAGCTCCTATGCGGGCGACAACATCATCACAGCCCAGGCCATGTA
CAAGGGGCTCTGGATGGAGTGCGTCACGCAGAGCACCGGCATGATGAGCTGCAAAATGTACGACTCGGTG
CTCGCCCTGCCGGGAGCCCTGCAGGCCACTCGAGCCTTAATGGTGGTGTCCCTGGTGTTGGGCTTCTTAG
CCATGTTTGTCGCCACGATGGGCATGAAGTGCACACGCTGTGGGGGAGATGACAAAGCGAAGAAGGCCCG
AATAGCTATGACTGGAGGCATTGTTTTCATTGTGGCAGGTCTTGCTGCCTTGGTAGCATGTTCCTGGATT
GGTCATCAGATTGTCACAGACTTTTATAACCCCTTGACGCCCATGAACGTTAAGTACGAGTTTGGACCTG
CCATCTTTATCGGCTGGGCAGGGTCTGCTCTGGTCCTTCTGGGAGGTGCCCTGCTCTCTTGCTCCTGTCC
AGGCAGTGAAAGCAAAGCTGCGTACCGAGCACCCCGCTCTTACCCCAAGTCCAATTCCTCCAAGGAATAC
GTGTGA

Translation (211 aa):
MANSGLQLLGFSMAMLGWVGLIASTAIPQWQMSSYAGDNIITAQAMYKGLWMECVTQSTGMMSCKMYDSV
LALPGALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKAKKARIAMTGGIVFIVAGLAALVACSWI
GHQIVTDFYNPLTPMNVKYEFGPAIFIGWAGSALVLLGGALLSCSCPGSESKAAYRAPRSYPKSNSSKEY
V


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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