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Report for CCDS6873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6873.1 Public Homo sapiens 9 LRSAM1 24 110 108 CCDS HistoryNCBI Gene:90678Re-query CCDS DB by CCDS ID:6873.1Re-query CCDS DB by GeneID:90678See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6873.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300417.11 ENSP00000300417.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300417.11Link to Ensembl Protein Viewer:ENSP00000300417.6Re-query CCDS DB by Nucleotide ID:ENST00000300417Re-query CCDS DB by Protein ID:ENSP00000300417
Original member Current member EBI ENST00000323301.8 ENSP00000322937.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000323301.8Link to Ensembl Protein Viewer:ENSP00000322937.4Re-query CCDS DB by Nucleotide ID:ENST00000323301Re-query CCDS DB by Protein ID:ENSP00000322937
Original member Current member EBI ENST00000373322.1 ENSP00000362419.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373322.1Link to Ensembl Protein Viewer:ENSP00000362419.1Re-query CCDS DB by Nucleotide ID:ENST00000373322Re-query CCDS DB by Protein ID:ENSP00000362419
Original member Current member EBI ENST00000675448.1 ENSP00000502167.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675448.1Link to Ensembl Protein Viewer:ENSP00000502167.1Re-query CCDS DB by Nucleotide ID:ENST00000675448Re-query CCDS DB by Protein ID:ENSP00000502167
Original member Current member NCBI NM_001005373.4 NP_001005373.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005373.4Link to Protein Sequence:NP_001005373.1Re-query CCDS DB by Nucleotide ID:NM_001005373Re-query CCDS DB by Protein ID:NP_001005373Link to BLAST:NP_001005373.1
Original member Current member NCBI NM_001005374.4 NP_001005374.1 Accepted alive Link to Nucleotide Sequence:NM_001005374.4Link to Protein Sequence:NP_001005374.1Re-query CCDS DB by Nucleotide ID:NM_001005374Re-query CCDS DB by Protein ID:NP_001005374Link to BLAST:NP_001005374.1
Original member Current member NCBI NM_001384142.1 NP_001371071.1 Accepted alive Link to Nucleotide Sequence:NM_001384142.1Link to Protein Sequence:NP_001371071.1Re-query CCDS DB by Nucleotide ID:NM_001384142Re-query CCDS DB by Protein ID:NP_001371071Link to BLAST:NP_001371071.1
Original member Current member NCBI NM_138361.5 NP_612370.3 Accepted alive Link to Nucleotide Sequence:NM_138361.5Link to Protein Sequence:NP_612370.3Re-query CCDS DB by Nucleotide ID:NM_138361Re-query CCDS DB by Protein ID:NP_612370Link to BLAST:NP_612370.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005373.1 723 Q6UWE0-1 723 100% 0 0
NP_001005374.1 723 Q6UWE0-1 723 100% 0 0
NP_001371071.1 723 Q6UWE0-1 723 100% 0 0
NP_612370.3 723 Q6UWE0-1 723 100% 0 0

Chromosomal Locations for CCDS 6873.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 127454528 127454599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127454998 127455054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127455576 127455620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127457316 127457393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127459003 127459071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127461173 127461257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127462252 127462373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127467740 127467830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127473801 127473931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127478934 127478963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127479383 127479505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127479839 127479978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127481183 127481227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127482950 127483020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127485736 127485835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127487676 127487763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127489444 127489518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127491215 127491295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127492802 127492897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127495320 127495418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127495964 127496095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127497253 127497334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127501010 127501143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127502774 127502899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2172 nt):
ATGCCGCTCTTCTTCCGGAAGCGGAAACCCAGTGAGGAGGCTCGGAAACGCCTGGAGTACCAGATGTGTT
TGGCAAAAGAAGCTGGGGCAGATGACATTCTCGACATCTCTAAATGTGAGCTCTCAGAGATTCCATTTGG
AGCTTTTGCAACATGCAAAGTTCTGCAGAAGAAGGTGCTGATCGTCCACACGAATCACCTCACTTCCCTG
CTTCCCAAATCCTGCAGCCTCCTGAGTCTGGCAACCATCAAGGTTCTAGATCTCCACGATAATCAGCTGA
CAGCCCTTCCTGACGATCTGGGGCAGCTGACTGCCCTCCAGGTCTTAAACGTGGAAAGGAATCAACTGAT
GCAGCTCCCACGTTCCATTGGGAACCTGACCCAGCTCCAGACTCTCAATGTTAAAGACAACAAGCTGAAG
GAGCTTCCAGACACCGTGGGGGAGCTTCGAAGCCTGCGTACCCTCAACATCAGTGGAAACGAGATCCAGA
GATTGCCGCAGATGCTGGCTCACGTTCGAACCCTGGAGATGCTGAGCCTTGACGCCTCGGCCATGGTCTA
CCCGCCGCGGGAGGTGTGTGGTGCCGGCACTGCGGCCATCTTGCAGTTCCTCTGCAAAGAGTCAGGGCTG
GAATACTACCCCCCTTCTCAGTACTTGCTGCCAATTCTGGAGCAAGATGGAATCGAGAACTCTCGGGACA
GCCCTGATGGGCCCACGGACAGATTCTCAAGGGAGGAGTTAGAGTGGCAGAACAGGTTCTCAGACTATGA
GAAGAGGAAGGAACAGAAGATGCTGGAGAAACTCGAGTTTGAACGGCGCCTGGAACTGGGGCAGCGGGAG
CACACCCAGCTCCTTCAGCAGAGCAGCAGCCAGAAGGATGAGATCCTTCAGACGGTCAAGGAGGAGCAGT
CCCGGCTGGAGCAGGGCCTGAGTGAGCACCAGCGCCACCTCAACGCAGAGCGGCAGCGGCTGCAGGAGCA
GCTGAAGCAGACGGAACAGAACATTTCCAGCCGGATCCAGAAGCTGCTGCAGGACAATCAGAGACAAAAG
AAAAGCTCCGAGATTTTGAAATCGCTGGAAAATGAAAGAATAAGAATGGAACAGTTGATGTCCATAACCC
AGGAGGAGACTGAGAGCCTGCGGCGACGTGACGTTGCCTCCGCCATGCAGCAGATGCTGACTGAGAGCTG
TAAGAACCGGCTCATCCAGATGGCCTACGAATCTCAGAGGCAGAACTTGGTCCAGCAGGCCTGTTCCAGC
ATGGCCGAAATGGATGAACGATTCCAGCAGATTCTGTCGTGGCAGCAAATGGATCAGAACAAAGCCATCA
GCCAGATCCTGCAGGAGAGCGCGATGCAGAAGGCTGCGTTCGAGGCACTCCAGGTGAAGAAAGACCTGAT
GCATCGGCAGATCAGGAGCCAGATTAAGTTAATAGAAACTGAGTTATTGCAGCTGACACAGCTGGAGTTA
AAGAGGAAGTCCCTGGACACAGAGTCACTCCAGGAGATGATCTCGGAGCAGCGCTGGGCCCTCAGCTCCC
TGCTCCAGCAGCTGCTCAAAGAGAAGCAGCAGCGAGAGGAAGAGCTCCGGGAAATCCTGACGGAGTTAGA
AGCCAAAAGTGAAACCAGGCAGGAAAATTACTGGCTGATTCAGTATCAACGGCTTTTGAACCAGAAGCCC
TTGTCCTTGAAGCTGCAAGAAGAGGGGATGGAGCGCCAGCTGGTGGCCCTCCTGGAGGAGCTGTCGGCTG
AGCACTACCTGCCCATCTTTGCGCACCACCGCCTCTCACTGGACCTGCTGAGCCAAATGAGCCCAGGGGA
CCTGGCCAAGGTGGGCGTCTCAGAAGCTGGCCTGCAGCACGAGATCCTCCGGAGAGTCCAGGAACTGCTG
GATGCAGCCAGGATCCAGCCAGAGCTGAAACCACCAATGGGTGAGGTCGTCACCCCTACGGCCCCCCAGG
AGCCTCCTGAGTCTGTGAGGCCATCCGCTCCCCCTGCAGAGCTGGAGGTGCAGGCCTCAGAGTGTGTCGT
GTGCCTGGAACGGGAGGCCCAGATGATCTTCCTCAACTGTGGCCACGTCTGCTGCTGCCAGCAGTGCTGC
CAGCCACTGCGCACCTGCCCGCTGTGCCGCCAGGACATCGCCCAGCGCCTCCGCATCTACCACAGCAGCT
GA

Translation (723 aa):
MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVLIVHTNHLTSL
LPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLPRSIGNLTQLQTLNVKDNKLK
ELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSLDASAMVYPPREVCGAGTAAILQFLCKESGL
EYYPPSQYLLPILEQDGIENSRDSPDGPTDRFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQRE
HTQLLQQSSSQKDEILQTVKEEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQNISSRIQKLLQDNQRQK
KSSEILKSLENERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIETELLQLTQLEL
KRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKSETRQENYWLIQYQRLLNQKP
LSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLLSQMSPGDLAKVGVSEAGLQHEILRRVQELL
DAARIQPELKPPMGEVVTPTAPQEPPESVRPSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCC
QPLRTCPLCRQDIAQRLRIYHSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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