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Report for CCDS19552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19552.1 Public Mus musculus 5 Sart3 23 108 98 CCDS HistoryNCBI Gene:53890Re-query CCDS DB by CCDS ID:19552.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19552.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019118.7 ENSMUSP00000019118.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019118.7Link to Ensembl Protein Viewer:ENSMUSP00000019118.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000019118Re-query CCDS DB by Protein ID:ENSMUSP00000019118
Original member Current member NCBI NM_016926.2 NP_058622.1 Accepted alive Link to Nucleotide Sequence:NM_016926.2Link to Protein Sequence:NP_058622.1Re-query CCDS DB by Nucleotide ID:NM_016926Re-query CCDS DB by Protein ID:NP_058622Link to BLAST:NP_058622.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058622.1 962 Q9JLI8-1 962 100% 0 0

Chromosomal Locations for CCDS 19552.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 113743129 113743303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113744544 113744734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113745047 113745199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113745580 113746031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113746624 113746792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113747923 113747999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113748762 113748874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113751203 113751312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113752214 113752272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113752391 113752468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113753598 113753705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113754233 113754371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113755370 113755525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113758139 113758263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113759221 113759272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113761095 113761279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113762829 113762933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113764073 113764199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113771321 113771635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2889 nt):
ATGGCGACGACGGCCGCATCTTCGGCGTCCGAGCCGGAGGTTGAGCCCCAGGCCGGGCCTGAGGCCGAGG
GAGAAGAGGATGAGGCGAAGCCGGCCGGTGTGCAGCGGAAGGTGCTGTCCGGCGCTGTGGCCGCGGAGGC
GGCGGAGGCCAAGGGCCCCGGATGGGACCTGCAGCGGGAAGGCGCGAGCGGGAGCGATGGGGATGAGGAG
GACGCCATGGCTTCCTCCGCCGAGAGCTCCGCCGGGGAGGACGAGTGGGAGTACGACGAGGAGGAGGAGA
AGAACCAGCTGGAGATCGAGCGGCTGGAGGAGCAGCTGTCCATCAATGGCTATGATTACAACTGCCACGT
GGAGCTCATCAGGCTGCTGCGGCTGGAAGGCGAGCTCAGCAGAGTGAGGGCGGCCCGCCAGAAGATGAGT
GAGCTCTTCCCCCTGACCGAAGAGCTCTGGCTGGAGTGGCTCCACGATGAGATCAGCATGGCCATGGACG
GCCTGGACCGCGAGCACGTGTACGAGCTCTTTGAGAGAGCCGTGAAGGACTACATCTGTCCAAACATTTG
GCTAGAGTATGGCCAGTACTCAGTTGGTGGCATTGGTCAGAAAGGTGGCCTTGAGAAGGTTCGCTCTGTC
TTTGAAAGAGCCCTGTCCTCTGTTGGCCTGCACATGACGAAAGGCCTGGCCATCTGGGAGGCCTACCGAG
AGTTTGAAAGCGCCATCGTGGAGGCTGCTCGGCTGGAGAAAGTGCACAGTCTCTTCCGGCGACAGCTGGC
GATCCCACTGTACGAGATGGAGGCCACCTTTGCAGAGTATGAAGAATGGTCAGAGGAGCCCATGCCGGAG
TCTGTACTTCAGAGCTATCAGAAAGCGCTGGGGCAGCTAGAGAAGTACAAGCCTTACGAGGAAGCGCTGC
TGCAGGCAGAGGCCCCTCGGCTGGCGGAATACCAAGCTTACATCGACTTCGAGATGAAAATCGGGGATCC
TGCCCGTATTCAGTTGATCTTTGAGCGTGCCCTGGTGGAGAACTGCCTGGTTCCAGACTTATGGATCCGC
TACAGTCAGTACCTAGATCGACAGCTGAAAGTTAAGGACTTGGTTTTATCTGTACACAGCCGTGCTGTGC
GGAACTGCCCATGGACAGTTGCCCTGTGGAGTCGGTACCTTCTGGCCATGGAGCGACATGGACTGGACCA
TCAAACGATTTCTGCGACCTTCGAGAACGCTCTGAGTGCCGGCTTCATCCAGGCCACTGACTATGTGGAG
ATCTGGCAGGTGTACCTCGACTACCTGAGGAGAAGGGTTGACTTCAGACAGGACTCTAGCAAGGAGCTGG
AAGAGCTGCGGTCCATGTTCACGCGAGCTCTGGAGTACCTGCAGCAGGAGGTTGAGGAGCGTTTCAGCGA
GAGTGGGGATCCAAGCTGCCTGATCATGCAGAGCTGGGCTCGGGTTGAGGCTCGCCTGTGCAATAACATG
CAGAAAGCCCGAGAGCTCTGGGACAGCATCATGACCAGAGGGAATGCCAAGTACGCCAACATGTGGCTGG
AGTATTACAACCTGGAACGGGCACACGGTGACACACAACACTGTCGGAAGGCTCTGCACCGAGCTGTCCA
GTGCACGAGTGACTACCCTGAGCACGTCTGTGAAGTGTTGCTCACCATGGAGAGGACAGAAGGGACCTTA
GAAGATTGGGATCTAGCCATTCAGAAAACGGAGACGCGCTTGGCTCGTGTGAATGAGCAGAGAATGAAGG
CCGCAGAGAAGGAAGCAGCTCTTGTGCAGCAGGAAGAAGAAAAGGCCGAGCAGCGGAAGAAGGTGCGGGC
GGAGAAGAAAGCCCTGAAAAAGAAGAAGAAAACGCGAGGTGCCGACAAGCGCAGGGAGGACGAGGACGAG
GAGAACGAGTGGGGCGAAGAGGAGGAAGAGCAGCCTTCCAAACGCAGAAGGACGGAGAACAGTCTGGCCT
CTGGAGAGGCTTCGGCTATGAAGGAAGAAACAGAGCTCTCCGGGAAATGCTTAACGATAGATGTTGGTCC
TCCTTCCAAGCAGAAAGAGAAGGCAGCCTCCCTTAAGCGGGACATGCCCAAGGTGGCTCACGACAGCAGT
AAGGACAGTGTCACCGTGTTTGTCAGCAACCTGCCCTACAGCATAGAAGAGCCCGAGGTGAAGCTCAGGC
CGCTCTTTGAGGTCTGTGGGGAGGTGGTCCAGATCAGGCCAATTTTCAGCAACCGCGGGGACTTCCGGGG
CTACTGCTATGTGGAGTTTGGAGAGGAGAAGTCAGCCCAGCAGGCCCTGGAGCTGGACAGGAAGATTGTG
GAGGGCAGGCCGATGTTTGTGTCCCCCTGTGTGGATAAGAGCAAAAACCCTGATTTTAAGGTGTTCAGAT
ACAGTACCACCCTGGAGAAACACAAACTCTTCATCTCTGGCCTGCCCTTTTCCTGCACCAAAGAGGAGCT
CGAGGACATTTGTAAGGCCCACGGCACCGTCAAGGACCTCAGGCTGGTCACTAACAGGGCTGGCAAGCCG
AAGGGCCTGGCGTATGTGGAGTATGAAAACGAGTCCCAGGCGTCCCAGGCAGTGATGAAGATGGACGGCA
TGACCATCAGAGAGAATGTCATCAAGGTGGCAATCAGCAATCCCCCTCAGCGAAAAGTCCCAGAGAAGCC
AGAAGTGAGGACAGCACCAGGGGCCCCCATGCTCCCCCGGCAGATGTATGGCGCGCGCGGGAAGGGACGG
ACCCAGCTCTCTCTTCTTCCTCGAGCTCTGCAGCGCCAGGGTGCTGCTCCTCAGGCTGAGAACGGCCCAG
CTCCGGGGCCCGCGGTCGCCCCGTCTGTGGCCACAGAGGCTCCTAAGATGTCCAATGCTGATTTTGCGAA
GTTGCTTCTGAGAAAGTGA

Translation (962 aa):
MATTAASSASEPEVEPQAGPEAEGEEDEAKPAGVQRKVLSGAVAAEAAEAKGPGWDLQREGASGSDGDEE
DAMASSAESSAGEDEWEYDEEEEKNQLEIERLEEQLSINGYDYNCHVELIRLLRLEGELSRVRAARQKMS
ELFPLTEELWLEWLHDEISMAMDGLDREHVYELFERAVKDYICPNIWLEYGQYSVGGIGQKGGLEKVRSV
FERALSSVGLHMTKGLAIWEAYREFESAIVEAARLEKVHSLFRRQLAIPLYEMEATFAEYEEWSEEPMPE
SVLQSYQKALGQLEKYKPYEEALLQAEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIR
YSQYLDRQLKVKDLVLSVHSRAVRNCPWTVALWSRYLLAMERHGLDHQTISATFENALSAGFIQATDYVE
IWQVYLDYLRRRVDFRQDSSKELEELRSMFTRALEYLQQEVEERFSESGDPSCLIMQSWARVEARLCNNM
QKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGTL
EDWDLAIQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQRKKVRAEKKALKKKKKTRGADKRREDEDE
ENEWGEEEEEQPSKRRRTENSLASGEASAMKEETELSGKCLTIDVGPPSKQKEKAASLKRDMPKVAHDSS
KDSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFGEEKSAQQALELDRKIV
EGRPMFVSPCVDKSKNPDFKVFRYSTTLEKHKLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKP
KGLAYVEYENESQASQAVMKMDGMTIRENVIKVAISNPPQRKVPEKPEVRTAPGAPMLPRQMYGARGKGR
TQLSLLPRALQRQGAAPQAENGPAPGPAVAPSVATEAPKMSNADFAKLLLRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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