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Report for CCDS53180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53180.1 Public Mus musculus X Diaph2 23 108 98 CCDS HistoryNCBI Gene:54004Re-query CCDS DB by CCDS ID:53180.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53180.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037854.14 ENSMUSP00000039334.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037854.14Link to Ensembl Protein Viewer:ENSMUSP00000039334.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037854Re-query CCDS DB by Protein ID:ENSMUSP00000039334
Original member NCBI NM_172493.2 NP_766081.1 Updated not alive Link to Nucleotide Sequence:NM_172493.2Link to Protein Sequence:NP_766081.1Re-query CCDS DB by Nucleotide ID:NM_172493Re-query CCDS DB by Protein ID:NP_766081
Current member NCBI NM_172493.3 NP_766081.1 Accepted alive Link to Nucleotide Sequence:NM_172493.3Link to Protein Sequence:NP_766081.1Re-query CCDS DB by Nucleotide ID:NM_172493Re-query CCDS DB by Protein ID:NP_766081Link to BLAST:NP_766081.1

Chromosomal Locations for CCDS 53180.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 129749976 129750116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129801395 129801427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129804013 129804189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129821239 129821343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129902900 129903039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129939245 129939319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129939403 129939472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129942899 129943035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129943843 129943951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129952673 129952783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129955894 129956012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129957243 129957359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129960044 129960162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129962920 129962984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129966526 129966630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129971279 129971593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129972495 129972609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130047325 130047426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130050367 130050461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130073822 130073923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130088527 130088766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130109252 130109381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130178936 130179060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130259077 130259241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130289854 130289989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130327966 130328061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130460871 130460935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3309 nt):
ATGGAGGAGCTCGGGGCGGCGGCGTCGGGAGCCGGAGGCGGCGGCGGTGGCGGCGAGGAACACGGCGGGG
GCCGGAGCAACAAGCGAGGCGCGGGGAACCGGGCCGCCAACGAAGAGGAGACGAGAAACAAACCCAAACT
GAACATTCAAATAAAAACTTTGGCAGATGATGTGCGTGACCGAATTACAAGTTTCAGAAAATCTGCCACC
AAGAGAGAAAAGCCTGTTATTCAACATTCTATTGATTATCAAACTGCAGTGGTTGAGATTCCCCCAGCTC
TGATAGTACATGATGACCGATCTTTGATTTTGTCTGAAAAGGAAGTTCTGGACCTCTTTGAGAAAATGAT
GGAAGATATGAACCTTAATGAAGAAAAGAAAGCTCCTTTGCGAAAGAAGGATTTTAGCATCAAGCGTGAG
ATGGTTGTCCAGTATATTTCTGCTACTTCCAAATCTGGTGGCCTGAAAAACAGCAAACATGAGTTCACCC
TTTCTTCACAAGAATATGTTCATGAATTACGATCTGGCATCTCAGATGAGAAACTTCTCAACTGCCTGGA
ATCTTTGAGAGTGTCTTTAACCAGCCATCCTGTCAGCTGGGTCAACAACTTTGGCTATGAAGGACTTGGA
GTCTTACTGGATGTGCTGGAGAAGCTTCTGGACAAAAAACAGCAAGAAAATATCGACAAGAAGAATCAGT
ACAAAGTCATTCAGTGCCTGAAAGCATTTATGAATAATAAGTTTGGACTACAAAGAATTCTAGGAGACGA
GAGAAGCCTTTTACTGTTGGCAAGAGCAATTGACCCGAAACAACAGAATATGATGACTGAAATAGTAAAA
ATCCTTTCTGCTATTTGCATTGTTGGGGAAGAAAACATTCTAGACAAACTTTTAGGGGGCATCACTGCTG
CAGCTGAACTAAATAATAGAGAACGATTTTCACCAATTGTGGAAGGCTTAGAAAATAATGAAGCCTTGCA
TCTCCAGGTGGCCTGCATGCAGTTCATAAATGCACTTGTCACCTCTCCATATGATCTTGATTTTCGAATT
CATTTGAGGAATGAATTCCTTCGTTGTGGATTAAAAGCAATGCTCCCTACTCTTAAAGAGATAGAGAATG
AAGGGCTTGATATTCAGTTGAGAGTGTTTGAAGAGAACAAAGAAGATGACCTAAGTGAATTATCCCACCG
TCTCAATGACATTCGAGCTGAAATGGATGATATTAATGAAGTCTACCATCTGCTGTATAATATGCTGAAG
GACACTGCTGCGGAACCTTACTTATTATCCATTCTCCAACACTTTCTGCTCATCAGAAATGATTACTACA
TCAGGCCACAGTATTATAAAATCATTGAGGAGTGTGTTTCACAGATAGTGCTACACTGCAGTGGCATGGA
CCCAGACTTCAAGTACCGGCAGCGCATAGACTTTGATTTCACTCATCTCCTAGATGCTTGTGTAAATAAG
GCAAAAGTTGAAGAAAATGAGCAAAAAGCAATGGAATTTTCAAAGAAGTTCGATGAAGAATTCACAGCTC
GTCAGGAAGCTCAAGCAGAGCTTCAGAAAAGAGATGAAAAAATCAAAGAACTGGAAACAGAAATCCAGCA
GCTTCGAGGACAGGGAGTTCCATCTGCAATTCCAGGTCCACCTCCACCACCTCCACTGCCAGGTGCAGGA
CCATGCCCACCACCACCACCTCCTCCTCCTCCACCACCTCCACTTCCAGGAGTCGTCCCTCCTCCTCCTC
CACCATTACCTGGGATGCCTGGTATTCCACCACCACCTCCACCACCTTTGTCTGGAGTACCTCCTCCACC
ACCACCCCCTGGGGGAGTTTTTCCTCTCCTATCAGGACCAATTGAGCTACCATATGGAATGAAGCAGAAA
AAATTATATAAGCCTGACATACCTATGAAAAGAATCAACTGGTCCAAGATTGAGCCTAAAGAATTATCCG
AAAACTGTGTTTGGCTAAAACTTAAAGAAGAGAAGTATGAGAATGCAGATCTATTTGCAAAACTGGCCTT
GACATTTCCTTCCCAGATGAAAGGTCAAAGGAATACAGAGGCTGCAGAAGAAAATAGGAGTGGGCCTCCA
AAGAAGAAAGTGAAGGAATTGAGAATTTTGGATACCAAAACAGCCCAGAATCTATCTATCTTCCTTGGAT
CTTACCGCATGCCATACGAGGAAATAAAGAACATTATTTTGGAGGTTAATGAAGAGATGCTCAGTGAGGC
CCTAATCCAGAATCTTGTAAAATATCTTCCTGACCAGAACGCACTCCGAGAACTAGCCCAGCTTAAGAGT
GAATATGATGATCTCTGTGAGCCTGAGCAGTTTGGTGTTGTGATGAGCACGGTGAAAATGTTACGTCCTC
GTCTCACGAGCATCCTTTTCAAACTCACCTTTGAAGAACATGTCAACAACATCAAACCAAGCATCATAGC
AGTAACTCTTGCATGTGAAGAACTGAAGAAAAGTGAAAGCTTTAAGAGACTCTTAGAGTTGATTCTTCTG
GTTGGAAACTACATGAACTCAGGCTCCAGGAATGCCCAGTCTCTAGGTTTTAAGATTAACTTTCTGTGTA
AGATCAAAGACACAAAATCAGCAGATCAAAAATCCACCCTTTTGCATTTTCTTGCTGAAATCTGTGATGA
GAAATACCGGGATATCCTGAAATTTCCTGATGAGCTGGAGCATGTGGAAAGCGCAGGCAAAGTTTCAGCT
CAAATACTCAAGAGCAACCTTGTAGCAATGGAACAAAGCATTCTTCATCTGGAGAAAAACATCAAGAATT
TCCCACCAGCAGAATCGCACCATGATAAGTTTGTGGAAAAGATGATGAGCTTTACCCAGAATGCCAGAGA
ACAGTATGACAAACTGTCCACCATGCACAGCAATATGTTGAAGCTCTATGAGAGTCTGGGAGAATACTTC
ATTTTTGACCCGAACACAGTAAACATGGAAGAATTTTTTGGTGATCTCAACACCTTCAGAACCCTATTTT
TGGAAGCACTGAAAGAAAACCACAAGAGAAAGGAAATGGAAGAGAAGAGCAGGAGAGCAAAGCTTGCAAA
AGAGAAAGCGGAACAAGAGAAGCTGGAACGCCAGAAGAAGAAGAAGCAACTCATTGACATAAACAAAGAG
GGTGATGAGACGGGAGTGATGGATAATCTTCTGGAAGCCCTACAGTCAGGTGCAGCATTCAGAGACCGCA
GAAAGCGAATTCCAAGAAATCCAGATAACAGACGGCCCCCTCTGGAAAGATCTCGCTCTCGCCACAATGG
AGCCATGTCATCCAAGTGA

Translation (1102 aa):
MEELGAAASGAGGGGGGGEEHGGGRSNKRGAGNRAANEEETRNKPKLNIQIKTLADDVRDRITSFRKSAT
KREKPVIQHSIDYQTAVVEIPPALIVHDDRSLILSEKEVLDLFEKMMEDMNLNEEKKAPLRKKDFSIKRE
MVVQYISATSKSGGLKNSKHEFTLSSQEYVHELRSGISDEKLLNCLESLRVSLTSHPVSWVNNFGYEGLG
VLLDVLEKLLDKKQQENIDKKNQYKVIQCLKAFMNNKFGLQRILGDERSLLLLARAIDPKQQNMMTEIVK
ILSAICIVGEENILDKLLGGITAAAELNNRERFSPIVEGLENNEALHLQVACMQFINALVTSPYDLDFRI
HLRNEFLRCGLKAMLPTLKEIENEGLDIQLRVFEENKEDDLSELSHRLNDIRAEMDDINEVYHLLYNMLK
DTAAEPYLLSILQHFLLIRNDYYIRPQYYKIIEECVSQIVLHCSGMDPDFKYRQRIDFDFTHLLDACVNK
AKVEENEQKAMEFSKKFDEEFTARQEAQAELQKRDEKIKELETEIQQLRGQGVPSAIPGPPPPPPLPGAG
PCPPPPPPPPPPPPLPGVVPPPPPPLPGMPGIPPPPPPPLSGVPPPPPPPGGVFPLLSGPIELPYGMKQK
KLYKPDIPMKRINWSKIEPKELSENCVWLKLKEEKYENADLFAKLALTFPSQMKGQRNTEAAEENRSGPP
KKKVKELRILDTKTAQNLSIFLGSYRMPYEEIKNIILEVNEEMLSEALIQNLVKYLPDQNALRELAQLKS
EYDDLCEPEQFGVVMSTVKMLRPRLTSILFKLTFEEHVNNIKPSIIAVTLACEELKKSESFKRLLELILL
VGNYMNSGSRNAQSLGFKINFLCKIKDTKSADQKSTLLHFLAEICDEKYRDILKFPDELEHVESAGKVSA
QILKSNLVAMEQSILHLEKNIKNFPPAESHHDKFVEKMMSFTQNAREQYDKLSTMHSNMLKLYESLGEYF
IFDPNTVNMEEFFGDLNTFRTLFLEALKENHKRKEMEEKSRRAKLAKEKAEQEKLERQKKKKQLIDINKE
GDETGVMDNLLEALQSGAAFRDRRKRIPRNPDNRRPPLERSRSRHNGAMSSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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