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Report for CCDS74852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74852.1 Public Homo sapiens 22 APOL4 24 110 108 CCDS HistoryNCBI Gene:80832Re-query CCDS DB by CCDS ID:74852.1Re-query CCDS DB by GeneID:80832See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74852.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000352371.5 ENSP00000338260.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000352371.5Link to Ensembl Protein Viewer:ENSP00000338260.3Re-query CCDS DB by Nucleotide ID:ENST00000352371Re-query CCDS DB by Protein ID:ENSP00000338260
Original member Current member NCBI NM_145660.2 NP_663693.1 Accepted alive Link to Nucleotide Sequence:NM_145660.2Link to Protein Sequence:NP_663693.1Re-query CCDS DB by Nucleotide ID:NM_145660Re-query CCDS DB by Protein ID:NP_663693Link to BLAST:NP_663693.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663693.1 351 Q9BPW4-1 351 100% 0 0

Chromosomal Locations for CCDS 74852.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 36191075 36191912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36195311 36195437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36199330 36199376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36201993 36202036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGGAGGGAGCTGCTTTGCTGAAAATCTTTGTCGTCTGCATCTGGGTGCAGCAAAACCATCCAGGCTGGA
CAGTGGCTGGACAGTTCCAAGAAAAGAAACGCTTCACTGAAGAAGTCATTGAATACTTCCAGAAGAAAGT
TAGCCCAGTGCATCTGAAAATCCTGCTGACTAGCGATGAAGCCTGGAAGAGATTTGTGCGTGTGGCTGAA
TTGCCCAGGGAAGAGGCAGATGCTCTCTATGAAGCTCTGAAGAATCTTACACCATATGTGGCTATTGAGG
ACAAAGACATGCAGCAAAAAGAACAGCAGTTTAGGGAGTGGTTTTTGAAAGAGTTTCCTCAAATCAGATG
GAAGATTCAGGAGTCCATAGAAAGGCTTCGTGTCATTGCAAATGAGATTGAAAAGGTCCACAGAGGCTGC
GTCATCGCCAATGTGGTGTCTGGCTCCACTGGCATCCTGTCTGTCATTGGCGTTATGTTGGCACCATTTA
CAGCAGGGCTGAGCCTGAGCATTACTGCAGCTGGGGTAGGGCTGGGAATAGCATCTGCCACGGCTGGGAT
CGCCTCCAGCATCGTGGAGAACACATACACAAGGTCAGCAGAACTCACAGCCAGCAGGCTGACTGCAACC
AGCACTGACCAATTGGAGGCATTAAGGGACATTCTGCGTGACATCACACCCAATGTGCTTTCTTTTGCAC
TTGATTTTGACGAAGCCACAAAAATGATTGCGAATGATGTCCATACACTCAGGAGATCTAAAGCCACTGT
TGGACGCCCTTTGATTGCTTGGCGATATGTACCTATAAATGTTGTTGAGACACTGAGAACACGTGGGGCC
CCCACCCGGATAGTGAGAAAAGTAGCCCGGAACCTGGGCAAGGCCACTTCAGGTGTCCTTGTTGTGCTGG
ATGTAGTCAACCTTGTGCAAGACTCACTGGACTTGCACAAGGGGGCAAAATCCGAGTCTGCTGAGTCGCT
GAGGCAGTGGGCTCAGGAGCTGGAGGAGAATCTCAATGAGCTCACCCATATCCATCAGAGTCTAAAAGCA
GGCTAG

Translation (351 aa):
MEGAALLKIFVVCIWVQQNHPGWTVAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAE
LPREEADALYEALKNLTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVIANEIEKVHRGC
VIANVVSGSTGILSVIGVMLAPFTAGLSLSITAAGVGLGIASATAGIASSIVENTYTRSAELTASRLTAT
STDQLEALRDILRDITPNVLSFALDFDEATKMIANDVHTLRRSKATVGRPLIAWRYVPINVVETLRTRGA
PTRIVRKVARNLGKATSGVLVVLDVVNLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIHQSLKA
G


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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