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Report for CCDS20651.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20651.1 Public Mus musculus 6 Atf7ip 23 108 98 CCDS HistoryNCBI Gene:54343Re-query CCDS DB by CCDS ID:20651.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20651.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032335.12 ENSMUSP00000032335.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032335.12Link to Ensembl Protein Viewer:ENSMUSP00000032335.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032335Re-query CCDS DB by Protein ID:ENSMUSP00000032335
Original member NCBI NM_019426.2 NP_062299.2 Updated not alive Link to Nucleotide Sequence:NM_019426.2Link to Protein Sequence:NP_062299.2Re-query CCDS DB by Nucleotide ID:NM_019426Re-query CCDS DB by Protein ID:NP_062299
Current member NCBI NM_019426.3 NP_062299.2 Accepted alive Link to Nucleotide Sequence:NM_019426.3Link to Protein Sequence:NP_062299.2Re-query CCDS DB by Nucleotide ID:NM_019426Re-query CCDS DB by Protein ID:NP_062299Link to BLAST:NP_062299.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062299.2 1306 Q7TT18-1 1306 100% 0 0

Chromosomal Locations for CCDS 20651.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 136559771 136561439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136563760 136563837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136565017 136565162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136566648 136566785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136571473 136571538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136575245 136575318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136582378 136582466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136587045 136587683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136593076 136593146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136596435 136596513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136599650 136599805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136603285 136603467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136605382 136605494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136606474 136606893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3921 nt):
ATGGATAGTGTAGAAGAACCTCAGAAAAAAGTCTTCAAGGCTCGGAAAACAATGAGAGCGAGCGATCGCC
AGCAGCTCGATGCTGTGCACAGAGTCAAGGGGGAGCTGCTGAGAGCCGACGGGAAGCTGCTGAACGGGAG
CCATGAGAATGGAGACTTGGATCCCACTTCACCCTTGGAAAACACAGATTGTATTCAAGATCGAGAAGAA
GTGAATGGTATTGATGGGATTTGTTTTCAGTCAGAAGAAAGTACAACGGAATGGAAAGAGACCCCTTGTA
TGCCCAATGTTGCTGTAAAAAACAAACAAGAAGATTTGAATAGTGAAGCTTTGTCCCCCAGTATAACTTG
TGATCTTTCTTCTAGAGTAACCACTGAACCAGGTTCTGGTAGTCCAGCCTCTGATAACCCAGGCTGTGGT
ACCCCAGTCTCTGATAACCCAGCCTCCGATAACCCAGCCTCTGACAACCCAGCCTCTGACAACCCAGACT
CTGGTGATCTGGCTGCAGGAGAGCTGGCCACTACAGTACAGGCTACTGGTGACTCTGCCTGTGAGGAGCC
TCCCTCCAGTGATCCCTCTTCCAGTGATCCCACTTCCAGTGAGCCCTCTTCCAGTGAGCCCACCTGTAGT
GAGCCCATCTCTGGAGATCCTGTTTCTGAAGAAGCCGCCTCTCATGATCTTGTCTCTGGTGATTCCACTT
GTAGCGAGCCAGTTTCTGGTGAGCCGGTGTCTCATGAAGCAGCTTCGAGTGAGCCAGCTACAAGTGAGCC
AGCTTCAGATGAACCGGTCGCAAGGGTCGTGGCGGCCTGCGAACTGGCTCCTGGGGAGTCAGCCTTGGAT
GATTGTGCCCCCTCCGGTGATTCACAGTCTGATGAGCCACCTTCTAGTGAGGACTCCCTTCCTAGGTCTG
TCTGCAGCGGACTGGCTTCTGGTGAGCTGACTCCTGGGGAGCTCTCTGTGGAACCAGCCACCGACACTGT
TAAACCAAGCTCATCGGCAGTTTGTGAAGCAGGTCCTGACCCTGACAAGACAGAGCCGAGTAGCAATAAC
AGTGATGATTGTCCAGGCAAGAGTGAAGACGACGAACACTTAGACCAAATTCAAAGTAAAGACTCCTGTG
ATGAGGGAAATAAAGTGAACAGTAATGTCGTCGAGAAGGAAGAACCTCTCGAAACACACAGTGCAATTAT
TTGTTCTGATCTACCTCCAGAAAACACAACGAAGATAGCGGAGGATCCCATCGCTGAGCCTGCTCTCGAG
GAAGAGGCCATCTCCAGCAGCATGGAAGTTGACCAAAGCGAAAAGGATGAGCATAAAAGTCCTGCAGAAC
CTGTAGCCGCTGTCAGTGAGGACCCCGCCGAGGAGGACAAGGAGGATACTGTCGTAGACAACACGGACTC
CATGGAAACAGATGAGATCATTCCGATTTTGGAAAAACTCGCACCCACCGAGGATGAACTCAGTTGCTTT
TCAAAAGCTTCTCTCCTTCCAGTCGAAACAAGTCAAGATTTGGAGGATAAAATGGAGGGCTCTTTCGGCT
CACCCTCGAAACAAGAAAGTAGTGAGAATTTGCCAAAAGAAGCCTTTTTAGTCCTTTCTGATGAAGAGGA
TCTTTCGTGTGGAAAAGATGAGTCCGAAGCTGTAGCGCAGAGTAAGATGAGCACCCCAGAGGGAGAAAAG
AGTGAGAAGGACGGCAAAGCTGAGGAAGAGGAGCGAGTTCCAGCCGAGGAGCAGCCACCTGTGAGAAATG
AGTTTTCTAGACGAAAACGTTCTAAGTCAGAAGACATGGACAGTGTAGAGTCCAAACGCCGGCGATATAT
GGATGAAGAATACGAGGCTGAGTTTCAAGTAAAGATCACAGCTAAAGGTGACATCAACCAGAAGCTTCAA
AAGGTCATACAGTGGTTGCTACAAGAAAAACTGTGTGCCCTACAGTGTGCTGTGTTTGATAAGACGTTGG
CAGAATTAAAAACTCGAGTGGAGAAGATAGAGTGCAACAAGAGGCATAAGGCAGTGCTCACCGAGCTGCA
GGCCAAGATAGCCAGGTTAACCAAACGTTTTGGAGCAGCCAAAGATGATCTTAAGAAAAGACAAGAAAGC
CCTCCAAACCCACCCATATCACCAGGAAAGCCTGCCAATGACACCAACAGCAATAATAATATGACCTACA
GAAATGCAGGCACAGTGCGACAACTGCTGGAGTCCAAAAGAAATGTTAGCGAGGGTCCACCACCATCCTT
TCAAACTCCTGTGAATACAGTGTCTTCAGCCAGTCACGCCACTTCTACAGCAGTTGTCAGTAGTCAGCCT
AAACTGCAGACCTCAGCAACCTCGGGCTCTCTGCCGGCGGCACCTCTTCTTCCTGCGCCCAGCACAGCCA
CCGTAGTTGCCACTACTCAGGTGCCTAGTGGGACCCCTCAGCCTACAATCTCTCTGCAGCCCTTGCCAGT
GATCCTGCATGTGCCCGTTGCCGTGACCTCTCAGCCTCAGCTCCTGCAAAGTCATCCAGGGACTTTAGTG
ACCAATCAACCATCTGGCAACGTGGAGTTCATATCTGTGCAAAGCCAACCTACAGTGAGTGGTCTTACCA
AAAATCCAGTATCCTTGCCACCCTTGCCAAACCCCACTAAACCAAACATTCCGTCAGTGCCCAGTCCTAG
TAGTATTCAGAGGAACTCTTCAACCACCGCCGCACCGTTGGGAACAACCCTTGCTGTCCAGGCCGTTCCA
ACCGCACATTCTATTGTGCAGGCCACAAGGACTTCTCTACCCACAGTAGGCCCGTCAGGACTCTATAGCT
CTTCAAGCAGTCGAGGCCCAATACAGATGAAAATCCCAATATCCACTTTTAGCCCTCCATCTTCAGCAGA
ACAAAATAGCTCTGCCACCCCAAGAATTGTTACAGAAAACCAGACAAACAAAACAGTAGATTCTTCTATT
AATAAGAAAGCAGCCGATAGCACATCACAGAGTGGAAAAGCTTCTAGCAGTGACTCAAGTGGTGTCATTG
ATCTCACGATGGACGATGAAGAGAGCGGAACTACACAAGACCCCAAGAAGATAAGTCCTCCTTCTTCATC
AACTGTGAGCACTTCTCAGCCCATGTCTCGACCGTTGCAGCCCATTCTGCCAGCACCACCTCTTCAGCCA
TCAGGCGTGCCCACAAGTGGACCATCTCAGGCAACTATCCATGTTCTGCCTACAGCTCCAACCACCGTGA
ATGTAACACATCGTCCAGTAACTCAGGTGACCACAAGACTCCCTGTACCGAGAGCTCCTGCAAACCACCA
AGTGGTTTATACAACTCTCCCAGCGCCAACCACTCAGGCTCCCCTACGAGGAACTGTTATGCAGGCTCCT
GCCGTTCGCCAGGTCAATCCTCAAAATAGTGTTACAGTTCGAGTGCCTCAGACAACCACATATGTTGTAA
ACAATGGACTGACTCTAGGCTCAGCAGGGCCTCAGCTCACGGTGCATCACAGGCCCCCACAAGTGCACAA
TGAGCCCCCACGCCCTCTGCATCCAGCGCCCTTACCAGAAGCCCCACAGCCCCAGCGTCTGCCCCCGGAA
GCTGCCAGCACTTCTCTGCCTCAGAAACCACACTTGAAGTTAGCACGAGTTCAGAGTCAGAATGGCATTG
TTCTGTCGTGGAGCGTCCTGGAAGTGGACCGAAGCTGTGCTACTGTTGACAGCTACCATCTCTATGCTTA
CCACGAGGAGCCCAGTGCCACCGTGCCCTCACAGTGGAAGAAGATCGGGGAAGTCAAGGCCCTGCCCTTG
CCCATGGCTTGCACTCTCACGCAGTTTGTGTCTGGCAGCAAGTACTACTTTGCAGTGCGCGCCAAGGACA
TTTATGGCCGCTTTGGGCCTTTCTGTGACCCACAGTCCACGGACGTGATCTCTTCCTCCCAGAACAGTTA
G

Translation (1306 aa):
MDSVEEPQKKVFKARKTMRASDRQQLDAVHRVKGELLRADGKLLNGSHENGDLDPTSPLENTDCIQDREE
VNGIDGICFQSEESTTEWKETPCMPNVAVKNKQEDLNSEALSPSITCDLSSRVTTEPGSGSPASDNPGCG
TPVSDNPASDNPASDNPASDNPDSGDLAAGELATTVQATGDSACEEPPSSDPSSSDPTSSEPSSSEPTCS
EPISGDPVSEEAASHDLVSGDSTCSEPVSGEPVSHEAASSEPATSEPASDEPVARVVAACELAPGESALD
DCAPSGDSQSDEPPSSEDSLPRSVCSGLASGELTPGELSVEPATDTVKPSSSAVCEAGPDPDKTEPSSNN
SDDCPGKSEDDEHLDQIQSKDSCDEGNKVNSNVVEKEEPLETHSAIICSDLPPENTTKIAEDPIAEPALE
EEAISSSMEVDQSEKDEHKSPAEPVAAVSEDPAEEDKEDTVVDNTDSMETDEIIPILEKLAPTEDELSCF
SKASLLPVETSQDLEDKMEGSFGSPSKQESSENLPKEAFLVLSDEEDLSCGKDESEAVAQSKMSTPEGEK
SEKDGKAEEEERVPAEEQPPVRNEFSRRKRSKSEDMDSVESKRRRYMDEEYEAEFQVKITAKGDINQKLQ
KVIQWLLQEKLCALQCAVFDKTLAELKTRVEKIECNKRHKAVLTELQAKIARLTKRFGAAKDDLKKRQES
PPNPPISPGKPANDTNSNNNMTYRNAGTVRQLLESKRNVSEGPPPSFQTPVNTVSSASHATSTAVVSSQP
KLQTSATSGSLPAAPLLPAPSTATVVATTQVPSGTPQPTISLQPLPVILHVPVAVTSQPQLLQSHPGTLV
TNQPSGNVEFISVQSQPTVSGLTKNPVSLPPLPNPTKPNIPSVPSPSSIQRNSSTTAAPLGTTLAVQAVP
TAHSIVQATRTSLPTVGPSGLYSSSSSRGPIQMKIPISTFSPPSSAEQNSSATPRIVTENQTNKTVDSSI
NKKAADSTSQSGKASSSDSSGVIDLTMDDEESGTTQDPKKISPPSSSTVSTSQPMSRPLQPILPAPPLQP
SGVPTSGPSQATIHVLPTAPTTVNVTHRPVTQVTTRLPVPRAPANHQVVYTTLPAPTTQAPLRGTVMQAP
AVRQVNPQNSVTVRVPQTTTYVVNNGLTLGSAGPQLTVHHRPPQVHNEPPRPLHPAPLPEAPQPQRLPPE
AASTSLPQKPHLKLARVQSQNGIVLSWSVLEVDRSCATVDSYHLYAYHEEPSATVPSQWKKIGEVKALPL
PMACTLTQFVSGSKYYFAVRAKDIYGRFGPFCDPQSTDVISSSQNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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