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Report for CCDS20328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20328.1 Public Mus musculus 6 Gp9 23 108 98 CCDS HistoryNCBI Gene:54368Re-query CCDS DB by CCDS ID:20328.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 20328.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032133.4 ENSMUSP00000032133.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032133.4Link to Ensembl Protein Viewer:ENSMUSP00000032133.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000032133Re-query CCDS DB by Protein ID:ENSMUSP00000032133
Original member Current member NCBI NM_018762.2 NP_061232.1 Accepted alive Link to Nucleotide Sequence:NM_018762.2Link to Protein Sequence:NP_061232.1Re-query CCDS DB by Nucleotide ID:NM_018762Re-query CCDS DB by Protein ID:NP_061232Link to BLAST:NP_061232.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061232.1 177 O88186 177 100% 0 0

Chromosomal Locations for CCDS 20328.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87779005 87779538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGACTACCTGGGGCCTCCTGTTTCTGCTCTGGCCTGCGACCACAGATACTCAGGCTTGCCCCAGGCCCT
GTACCTGCCAGTCCTTGGAAACCATGGGGTTAAAGGTGAACTGTGAGGGGCAAGGCCTCACAGCCCTGCC
CGTGATACCAGCGCACACTCGCCAGCTCCTGCTGGCCAACAATAGCCTGCGTTCAGTGCCACCAGGTGCC
TTCGACCACTTGCCTCAGCTGTGGGACCTGGATGTGACACACAACCCCTGGCACTGTGACTGCAGCCTCA
CCTACCTGCGCCTCTGGCTGGAGGACCACATGCCCGAGGCCCTAATGCATGTGTACTGTGCCAGCCCTGA
CTTGGCCACCAGGCGCCCGCTGGGCCAGCTGACAGGTTATGAGCTGGGCAGCTGTGGCTGGAAGCTGCCA
CCATCCTGGGCCTATCCAGGGGTGTGGTGGGATGTGTCACTAGTGGCTGTGGCTGTGCTGGGCCTGATTC
TGCTGGCTGGTCTATTGAACACATTTACAGAGTCCAGGAACTGA

Translation (177 aa):
MTTWGLLFLLWPATTDTQACPRPCTCQSLETMGLKVNCEGQGLTALPVIPAHTRQLLLANNSLRSVPPGA
FDHLPQLWDLDVTHNPWHCDCSLTYLRLWLEDHMPEALMHVYCASPDLATRRPLGQLTGYELGSCGWKLP
PSWAYPGVWWDVSLVAVAVLGLILLAGLLNTFTESRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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