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Report for CCDS28659.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28659.1 Public Mus musculus 17 Stk19 23 108 98 CCDS HistoryNCBI Gene:54402Re-query CCDS DB by CCDS ID:28659.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28659.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077477.11 ENSMUSP00000076686.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077477.11Link to Ensembl Protein Viewer:ENSMUSP00000076686.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000077477Re-query CCDS DB by Protein ID:ENSMUSP00000076686
Original member Current member NCBI NM_019442.3 NP_062315.1 Accepted alive Link to Nucleotide Sequence:NM_019442.3Link to Protein Sequence:NP_062315.1Re-query CCDS DB by Nucleotide ID:NM_019442Re-query CCDS DB by Protein ID:NP_062315Link to BLAST:NP_062315.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062315.1 254 Q9JHN8 254 100% 0 0

Chromosomal Locations for CCDS 28659.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34824279 34824324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34824514 34824661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34824751 34824848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34832013 34832152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34832446 34832541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34836430 34836566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34836777 34836876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGAATCGCAAGAGACGGCTCCTGGCGTCTGAGGCTTTTGGGGTGAAGCGGAGGCGGGCGCCGGGGCCCG
TGAGAGCGGATCCTTTAAGAACAAGAGCAGGCTCGGCGCGCGAGGCCATCGAGGAGCTCGTGAAGCTGTT
TCCCCGGGGGCTGTTCGAGGATGCGCTGCCGCCCATCGCGCTGAGGAGCCAAGTGTACAGTCTGGTGCCA
GACCGGACGGTGGCCGACCTACAACTGAAGGAGCTTCAAGAGCTGGGAGAGATCCGAATTATCCAGCTAG
GCTTTGACTTGGATGCTCATGGGATTGTCTTCACGGAAGACTACAGGACCCGGGTCCTCAAGGCCTGTGA
TGGCCGACCATGTGCTGGGGCGGTGCAGAAGTTCCTGGCCTCAGTGCTCCCAGCCTGTGGGGACCTCAGT
TTCCAGCAGGATCAGATGACACAGACTTATGGCTTCAGGGACCCGGAGATCACGCAGCTGGTGAACGCTG
GGGTCCTCACTGTCCGAGATGCTGGAAGCTGGTGGCTGGCTGTGCCTGGAGCTGGGAGATTCATCAAGTG
CTTTGTTAAAGGGCGCCAGGCTGTACTGAGCATGGTGCGGAAGGCCAAGTACCGGGAGCTTGCCTTGTCA
GAGCTCCTGGGCCGCAGGGCCCCTTTGGCAGTGCGGCTAGGTCTTGCCTACCATGTGCACGACCTCATTG
GAGCCCAGCTGGTGGACTGTGTCCCCACCACTTCTGGAACCCTCCTTCGCCTGCCAGATACATGA

Translation (254 aa):
MNRKRRLLASEAFGVKRRRAPGPVRADPLRTRAGSAREAIEELVKLFPRGLFEDALPPIALRSQVYSLVP
DRTVADLQLKELQELGEIRIIQLGFDLDAHGIVFTEDYRTRVLKACDGRPCAGAVQKFLASVLPACGDLS
FQQDQMTQTYGFRDPEITQLVNAGVLTVRDAGSWWLAVPGAGRFIKCFVKGRQAVLSMVRKAKYRELALS
ELLGRRAPLAVRLGLAYHVHDLIGAQLVDCVPTTSGTLLRLPDT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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