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Report for CCDS43554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43554.1 Public Homo sapiens 7 MIOS 24 110 108 CCDS HistoryNCBI Gene:54468Re-query CCDS DB by CCDS ID:43554.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43554.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340080.9 ENSP00000339881.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340080.9Link to Ensembl Protein Viewer:ENSP00000339881.4Re-query CCDS DB by Nucleotide ID:ENST00000340080Re-query CCDS DB by Protein ID:ENSP00000339881
Original member Current member EBI ENST00000405785.5 ENSP00000384088.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405785.5Link to Ensembl Protein Viewer:ENSP00000384088.1Re-query CCDS DB by Nucleotide ID:ENST00000405785Re-query CCDS DB by Protein ID:ENSP00000384088
Original member Current member NCBI NM_001370076.1 NP_001357005.1 Accepted alive Link to Nucleotide Sequence:NM_001370076.1Link to Protein Sequence:NP_001357005.1Re-query CCDS DB by Nucleotide ID:NM_001370076Re-query CCDS DB by Protein ID:NP_001357005Link to BLAST:NP_001357005.1
Original member Current member NCBI NM_001370077.1 NP_001357006.1 Accepted alive Link to Nucleotide Sequence:NM_001370077.1Link to Protein Sequence:NP_001357006.1Re-query CCDS DB by Nucleotide ID:NM_001370077Re-query CCDS DB by Protein ID:NP_001357006Link to BLAST:NP_001357006.1
Original member Current member NCBI NM_001370080.1 NP_001357009.1 Accepted alive Link to Nucleotide Sequence:NM_001370080.1Link to Protein Sequence:NP_001357009.1Re-query CCDS DB by Nucleotide ID:NM_001370080Re-query CCDS DB by Protein ID:NP_001357009Link to BLAST:NP_001357009.1
Original member Current member NCBI NM_019005.4 NP_061878.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019005.4Link to Protein Sequence:NP_061878.3Re-query CCDS DB by Nucleotide ID:NM_019005Re-query CCDS DB by Protein ID:NP_061878Link to BLAST:NP_061878.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357005.1 875 Q9NXC5-1 875 100% 0 0
NP_001357006.1 875 Q9NXC5-1 875 100% 0 0
NP_001357009.1 875 Q9NXC5-1 875 100% 0 0
NP_061878.3 875 Q9NXC5-1 875 100% 0 0

Chromosomal Locations for CCDS 43554.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 7572476 7573769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7574098 7574196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7583118 7583372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7585636 7585805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7588498 7588563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7589405 7589563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7594980 7595132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7596257 7596461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7605942 7606071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7606996 7607092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2628 nt):
ATGAGCGGTACCAAACCTGATATTTTATGGGCACCACACCATGTTGATAGATTTGTTGTGTGTGACTCAG
AACTAAGTCTTTATCATGTGGAATCTACTGTGAATTCAGAACTCAAAGCTGGATCTTTACGTTTATCTGA
AGACTCTGCAGCTACATTACTGTCAATAAATTCAGATACACCCTATATGAAATGTGTTGCCTGGTATCTT
AATTATGATCCTGAATGTCTGCTGGCAGTTGGACAAGCAAATGGTCGAGTTGTACTTACAAGCCTTGGTC
AAGATCATAACTCAAAGTTCAAAGATTTGATAGGAAAAGAGTTTGTTCCAAAACATGCACGACAATGTAA
TACCCTTGCCTGGAATCCACTGGATAGTAACTGGCTAGCTGCTGGTTTAGATAAGCACAGAGCTGACTTT
TCAGTGCTAATATGGGATATCTGCAGCAAATATACTCCTGATATAGTTCCCATGGAAAAAGTGAAACTTT
CAGCAGGTGAAACTGAAACAACATTATTAGTAACAAAACCACTTTATGAGTTAGGACAGAATGATGCTTG
TCTGTCTCTTTGTTGGCTTCCACGAGACCAGAAACTTCTCCTTGCTGGTATGCATCGTAACCTAGCTATA
TTTGATCTTCGGAATACAAGCCAAAAGATGTTCGTAAATACAAAAGCTGTTCAGGGTGTGACGGTAGACC
CATATTTCCACGATCGTGTTGCTTCCTTCTATGAAGGTCAGGTTGCAATATGGGATCTTAGAAAATTTGA
GAAGCCAGTTTTGACATTGACTGAGCAACCAAAACCCTTAACAAAAGTAGCATGGTGTCCCACTAGGACT
GGTCTACTTGCCACTTTAACAAGGGATAGTAATATTATTAGATTGTATGATATGCAGCATACACCCACTC
CCATTGGGGATGAAACTGAACCCACAATAATTGAAAGAAGTGTGCAACCTTGTGACAATTACATTGCTTC
CTTTGCGTGGCATCCAACAAGTCAAAATCGAATGATAGTTGTAACTCCCAACCGAACAATGTCAGACTTC
ACTGTTTTTGAAAGGATATCTCTTGCCTGGAGCCCAATTACATCTTTAATGTGGGCTTGTGGTCGTCATT
TATATGAATGTACGGAAGAAGAAAATGATAATTCTTTAGAAAAAGATATAGCAACGAAGATGCGTCTTCG
GGCTTTATCAAGGTATGGACTTGATACAGAGCAGGTGTGGAGGAACCACATTTTAGCTGGAAATGAAGAT
CCACAGCTCAAGTCACTCTGGTATACTCTGCACTTTATGAAGCAATACACAGAAGATATGGATCAGAAAT
CTCCAGGCAACAAAGGATCATTGGTTTATGCAGGAATTAAATCAATTGTAAAGTCATCGTTGGGAATGGT
GGAAAGCAGCAGACATAATTGGAGTGGGTTGGATAAGCAAAGTGATATTCAAAATTTAAATGAAGAGAGA
ATCTTAGCTTTACAGCTTTGTGGGTGGATAAAGAAAGGAACGGATGTAGACGTGGGGCCATTTTTGAACT
CCCTTGTACAAGAAGGGGAATGGGAAAGAGCTGCTGCTGTGGCATTGTTCAACTTGGATATTCGCCGAGC
AATCCAAATCCTGAATGAAGGGGCATCTTCTGAAAAAGGAGATCTGAATCTCAATGTGGTAGCAATGGCT
TTATCGGGTTATACGGATGAGAAGAACTCCCTTTGGAGAGAAATGTGTAGCACACTGCGATTACAGCTAA
ATAACCCGTATTTGTGTGTCATGTTTGCATTTCTGACAAGTGAAACAGGATCTTACGATGGAGTTTTGTA
TGAAAACAAAGTTGCAGTACGTGACAGAGTGGCATTTGCTTGTAAATTCCTTAGTGATACTCAGTTAAAT
AGATACATCGAAAAGTTGACCAATGAAATGAAAGAGGCTGGAAATTTGGAAGGAATTTTGCTTACAGGCC
TTACTAAAGATGGAGTGGACTTAATGGAGAGTTATGTTGATAGAACTGGAGATGTTCAAACAGCAAGTTA
CTGTATGTTACAGGGTTCACCTTTAGATGTTCTTAAAGATGAAAGGGTTCAGTACTGGATTGAGAATTAT
AGAAATTTATTAGATGCCTGGAGGTTTTGGCATAAACGAGCTGAATTTGATATTCACAGGAGTAAGTTGG
ATCCCAGTTCCAAGCCTTTAGCACAAGTTTTTGTGAGTTGCAATTTCTGTGGCAAGTCAATCTCCTACAG
CTGTTCAGCTGTGCCTCATCAGGGCAGAGGTTTTAGTCAGTATGGTGTGAGTGGCTCACCAACGAAATCT
AAAGTCACAAGTTGTCCTGGCTGTCGAAAACCACTTCCTCGATGTGCGCTTTGTCTCATTAATATGGGAA
CACCAGTTTCTAGCTGTCCTGGAGGAACCAAATCAGATGAAAAAGTGGACTTGAGCAAGGACAAAAAATT
AGCCCAATTTAACAACTGGTTTACATGGTGTCATAATTGCAGGCACGGTGGACATGCTGGACATATGCTT
AGTTGGTTCAGGGACCATGCAGAGTGCCCTGTGTCGGCATGCACGTGTAAATGTATGCAGTTGGATACAA
CAGGGAATCTGGTACCTGCAGAGACTGTCCAGCCATAA

Translation (875 aa):
MSGTKPDILWAPHHVDRFVVCDSELSLYHVESTVNSELKAGSLRLSEDSAATLLSINSDTPYMKCVAWYL
NYDPECLLAVGQANGRVVLTSLGQDHNSKFKDLIGKEFVPKHARQCNTLAWNPLDSNWLAAGLDKHRADF
SVLIWDICSKYTPDIVPMEKVKLSAGETETTLLVTKPLYELGQNDACLSLCWLPRDQKLLLAGMHRNLAI
FDLRNTSQKMFVNTKAVQGVTVDPYFHDRVASFYEGQVAIWDLRKFEKPVLTLTEQPKPLTKVAWCPTRT
GLLATLTRDSNIIRLYDMQHTPTPIGDETEPTIIERSVQPCDNYIASFAWHPTSQNRMIVVTPNRTMSDF
TVFERISLAWSPITSLMWACGRHLYECTEEENDNSLEKDIATKMRLRALSRYGLDTEQVWRNHILAGNED
PQLKSLWYTLHFMKQYTEDMDQKSPGNKGSLVYAGIKSIVKSSLGMVESSRHNWSGLDKQSDIQNLNEER
ILALQLCGWIKKGTDVDVGPFLNSLVQEGEWERAAAVALFNLDIRRAIQILNEGASSEKGDLNLNVVAMA
LSGYTDEKNSLWREMCSTLRLQLNNPYLCVMFAFLTSETGSYDGVLYENKVAVRDRVAFACKFLSDTQLN
RYIEKLTNEMKEAGNLEGILLTGLTKDGVDLMESYVDRTGDVQTASYCMLQGSPLDVLKDERVQYWIENY
RNLLDAWRFWHKRAEFDIHRSKLDPSSKPLAQVFVSCNFCGKSISYSCSAVPHQGRGFSQYGVSGSPTKS
KVTSCPGCRKPLPRCALCLINMGTPVSSCPGGTKSDEKVDLSKDKKLAQFNNWFTWCHNCRHGGHAGHML
SWFRDHAECPVSACTCKCMQLDTTGNLVPAETVQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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