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Report for CCDS48562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48562.1 Public Mus musculus 10 Tbc1d32 23 108 98 CCDS HistoryNCBI Gene:544696Re-query CCDS DB by CCDS ID:48562.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48562.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099739.4 ENSMUSP00000097328.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099739.4Link to Ensembl Protein Viewer:ENSMUSP00000097328.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099739Re-query CCDS DB by Protein ID:ENSMUSP00000097328
Original member Current member NCBI NM_001033385.3 NP_001028557.2 Accepted alive Link to Nucleotide Sequence:NM_001033385.3Link to Protein Sequence:NP_001028557.2Re-query CCDS DB by Nucleotide ID:NM_001033385Re-query CCDS DB by Protein ID:NP_001028557Link to BLAST:NP_001028557.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028557.2 1296 Q3URV1-1 1296 100% 0 0

Chromosomal Locations for CCDS 48562.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 56017585 56017704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56027899 56028087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56040139 56040279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56048863 56049017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56049762 56049877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56051389 56051458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56064474 56064557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56072476 56072601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56087531 56087624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56088306 56088414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56089717 56089839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56123511 56123599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56129061 56129177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56150794 56150912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56151766 56151853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56155680 56155818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56161135 56161217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56162011 56162212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56170844 56170971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56173842 56173984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56177492 56177584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56180480 56180620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56187743 56187833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56192840 56192899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56195356 56195500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56196408 56196469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56196558 56196661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56196788 56196866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56198435 56198560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56201888 56201956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56214950 56215118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56224564 56224725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 56228478 56228632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3891 nt):
ATGGCCCATTTCTCCAGCGAGGATGAGGTGATGCTGCAGGCGATGCTCCGGCAGCTGTTCCAGAGCGTGA
AGGAGAAAATCACCGGAGCTCCCTCCTTGGAGTGCGCAGAGGAGATCCTCTTGCGGCTGGAGGAGACTGA
CGAAAATTTTCACAACTATGAATTTGTGAAATACCTCAGACAGCACATATGTAACATGTTGGGGTCTATG
ATTGAAGAAGAAATGGAAAAATGCACATCTGATCAGAATCAGGGGGAGGATTCTGGCTATGACACGGTTG
TTCAGCATGTTACCAAAAGAACGCAGGAATCTAAAGAGTATAAGGAAATGATGCATTCCCTGAAGAACAT
TATGATGGTGGTGGTCGAGGCGATGATCAACAAGTTTGAGGAAGACGAGACACGGAGTGAGGACAGGCAG
AGGAAAATGCAGAGTGGCAGCTGCTGCACAGACAACTGCTCCGACAGTGACTCCTCCTTCAATCAGAGTT
ACAAATTCTGTCAAGGGAAACTACGGTTGATTTTAGACCAGTTGGATCCTGGCCAACCTAAAGAGGTGAG
ATATGAAGCTTTACAAACATTGTGCTCAGCTCCCCCATCCGACGTCCTGAGCTGTGAGAACTGGACCACT
CTCTGTGAAAAGCTGACCACATCTCTGTCTGATCCAGATCCTATGTTCACTGACCGGATTTTAAAGTTCT
ACGCACAGACTTTTACCCTCTCACCGTTACATATGACCAAGGAGATTTATACAAGCTTAGCTAAATATCT
GGAGGTATATTTTCTTTCTAGAGAAAATCACCTTCCTACTCTTTCAACTGGAGTAGACATAACCAGTCCC
AATGTGACCCGCTTACTGAAAAAGGTTCGCCTTCTGAATGAGTACCAGAAAGAGGCTCCATCTTTTTGGA
TTCGTCACCCAGAGAAGTATATGGAGGAAATTGTGGAGAGTACTCTGTCCTTGCTCTCAGTCAAACACGA
GCAAAGCCACCTGGTGCCACAGAAGATTTTGGATCCCATCTATTTTTTCGCATTAGTTGATACTAAGGCT
GTGTGGTTCAAAAAGTGGATGCATGCATATTACAGCAGAACTGCAGTACTGAGACTTCTTGAAAAGAAAT
ATAAATGTCTGATAACTACAGCAGTTCAGCAATGTGTTCAGTACTTGGAGTTATGTGAAGCTATGAAAGC
TGATGAAATTCTGAGACATCCAAAACATTGTGGAACCAAGCAAAAGAGTTTCTACTATTCAGGACAAGAA
TTGCAATATATTTATTTCATTCACTCACTGTGCCTTTTAGGAAGATTGTTGATCTATACACAGGGCAGGA
AATTATTCCCCATAAAGCTGAAGAATAGAAAAGATTCAGTATCCCTGACAAATCTGCTGGTTTTGTTTAC
TCAACTTATCTATTATTCACCAAGTTGTCCAAAGATGACCTCCATCATGTGTTCAGAGAACTATTCTCCT
GCAAGTATGGTGACTGACGTTCTGCGGATGCTCTGCGACCAGAAAGAATGTGCAGTCGAGTGCTTATACA
ACAGCACAGTGACAGAGGCGCTTCTCCTGCCCATTCATAACCTGACGAAAGGAACTGCGGCTGCTCCAGA
TTGCTCTGAGACAGCTCTAATTCATATAGCTGATATTTTGGCAAGAATCGCTTCTGTCGAGGAAGGACTC
ATCTTACTTCTGTATGGAGAAAATATGAACTCTTCTGAAGAAGAAAGTCTTACAGGTGCTCATATAATAG
CCAAGTTTTCAAAGAAACTTCTTGAAGAAGATATTTCTATTTTTTCTGGATCGGAAATGTTGCCTGTAGT
TAAAGGAGCTTTTATTTCTGTGTGTCGTCAGATCTACGGTACCTGCGAAGGCTTACAGGTGTTGCTTCCT
TATGGTTTACATGAATCCATAGCAAAGGCATGGAAGAAGACAAGCTTGCTATCAGAAAGGATCCCCACTC
CAGTAGAGGGCTCTGATTCTGTTTCCTCAGTGAGCCAGGTGTCTCCGAACAGTGTGGCTTGGGAAGACAA
TTTGTTGGATGATTTACTGAATTTTGCAGCCACCCCCAAAGGACTGCTGCTTCTTCAGAGAACAGGCGCC
ATCAATGAATGTGTGACGTTTATGCTCAGCCAGTATGCAAAAAAGCCACAGGTCAACAGGCAGAAGAAGT
TTGGCTATGAAGTCTTGGTTGTACAGGTGGCATCGACAGCAGCAGGTGCAGTGGCTCTACAGAATTCAGG
CTTTATTAGTGCACTTATAACTGAGTTATGGTCCAACCTTGAATGTGGAAGAGATGATGTAAGGCTAACT
CATCCCAGAGCTACCCCAGTGGACCCAATTGACCGAAGCTGTCAGAAGTCCTTCCTTGCACTGGTGAACC
TGCTGTCCTACCCTGCTGTGTATGAGCTAACAGCCAATCAGGAGCTTCCTAATAAGGCAGAGTATTCTCT
TCGTGAAGTTCCCACATGCATCATCGATATAATGGATAGGCTTATTGTTTTGAACTCTGAAGCCAAGATC
CGGTCTTTACTGAATTATGAACAGTCGCACACCTTTGGTCTAAGGTTACTAAGTGTGGTGTGCTGTGATC
TGGATGCGCTTCTCTTACTGGAGGCTCAGTATCAAGTATCTAACATGTTATTACATGCTCAAGAAGAAAA
TACCTTTGAGATCTCTGAGAACCACAGGAACTTTATAATTGATGGATTATCAGTAGAGAGAAATCATGTT
CTCGTAAGGATTAATCTTATTGGTGGTCCTTCAGAGCGGATATTGCCTCCAAGGATGCTTGAGAAGGGGG
ATGACCCATATCCTTGGCCAATGTTTTCTTCATATCCATTGCCACACTGCTATCAGTCAGAAGGTCCACG
AAGTGCTGATCTAAAACAAGACAATGATATTGGAAACCTGTTATCATGCTTCAAAATGTCCGATAAACAA
ACAGAGTGGATAGAGAACTGCCGAAGACAGTTTTGTAAAACAATGAAGTCCAAGCCTGATGCAGTCCATG
GAAGTGCCTTAGGAGAACTACTGGAAAAATTTGTGCTGCTTCTCACCGAAAACCCATCTGAATGTTACTT
CCCTTCAGTGGAATACACAGCTACTGATGCAAATGTGAAGAATGAAAGTCTCTCATCTGTGCAGCAGCTT
GGCATGAAAATGACTGTCAGGTATGGGAGGTTTCTCAATTTGTTAAAAGATGGTGCAGAAAATGAGCTTG
CTTTGGTCTTAAAGCATTGTGAGAAATTCCTGAAACAACAGCAGTCACCGGTCACTTCTTCTCTCCTGTG
CCTGCAAGGGAACTACGCAGGCCATGACTGGTTTGTGTCTTCTCTGTTCATGATAATGCTGGGAGACAAA
GGGAAGACCTTCCACTTTCTCCAGCATTTCTCCAGGCTGCTGACCTCTGCCTTCCTTTGGGTGCCACGGC
TGCATAATTCTAGGTACCTTCCTGTCGACACCCTAGGGACCGGCATCCATCCCATCTACTTTTGCAGTGC
TCACTACATTGAAATGCTGCTGAAGGCTGAGGTGCCGCTTGTGTTTTCGGCTTTCCACATGTCTGGTTTT
GCTCCATCCCAGATTTGCCTGCAGTGGATAACTCAGTGTTTTTGGAATTACTTAGATTGGATAGAAATAT
GCCACTATATTGCTACTTGTGTTGTCCTTGGTCCTGATTATCAAGTGTATGTCTGCATAGCCGTTCTCAA
ACATCTGCAGCGAGATATTCTCCAGCATACCCAGACTCAAGATCTGCAAGTCTTTCTCAAAGAAGAAGCA
CTGCATGGGTTTCGAGTGAGCAACTATTTTGAATACATGGAGAATTTGGAGCAAAACTACCGACCAGTGC
TGCTGCGAGACATGCGCAGCATCAGAGTGCAGAACACATAG

Translation (1296 aa):
MAHFSSEDEVMLQAMLRQLFQSVKEKITGAPSLECAEEILLRLEETDENFHNYEFVKYLRQHICNMLGSM
IEEEMEKCTSDQNQGEDSGYDTVVQHVTKRTQESKEYKEMMHSLKNIMMVVVEAMINKFEEDETRSEDRQ
RKMQSGSCCTDNCSDSDSSFNQSYKFCQGKLRLILDQLDPGQPKEVRYEALQTLCSAPPSDVLSCENWTT
LCEKLTTSLSDPDPMFTDRILKFYAQTFTLSPLHMTKEIYTSLAKYLEVYFLSRENHLPTLSTGVDITSP
NVTRLLKKVRLLNEYQKEAPSFWIRHPEKYMEEIVESTLSLLSVKHEQSHLVPQKILDPIYFFALVDTKA
VWFKKWMHAYYSRTAVLRLLEKKYKCLITTAVQQCVQYLELCEAMKADEILRHPKHCGTKQKSFYYSGQE
LQYIYFIHSLCLLGRLLIYTQGRKLFPIKLKNRKDSVSLTNLLVLFTQLIYYSPSCPKMTSIMCSENYSP
ASMVTDVLRMLCDQKECAVECLYNSTVTEALLLPIHNLTKGTAAAPDCSETALIHIADILARIASVEEGL
ILLLYGENMNSSEEESLTGAHIIAKFSKKLLEEDISIFSGSEMLPVVKGAFISVCRQIYGTCEGLQVLLP
YGLHESIAKAWKKTSLLSERIPTPVEGSDSVSSVSQVSPNSVAWEDNLLDDLLNFAATPKGLLLLQRTGA
INECVTFMLSQYAKKPQVNRQKKFGYEVLVVQVASTAAGAVALQNSGFISALITELWSNLECGRDDVRLT
HPRATPVDPIDRSCQKSFLALVNLLSYPAVYELTANQELPNKAEYSLREVPTCIIDIMDRLIVLNSEAKI
RSLLNYEQSHTFGLRLLSVVCCDLDALLLLEAQYQVSNMLLHAQEENTFEISENHRNFIIDGLSVERNHV
LVRINLIGGPSERILPPRMLEKGDDPYPWPMFSSYPLPHCYQSEGPRSADLKQDNDIGNLLSCFKMSDKQ
TEWIENCRRQFCKTMKSKPDAVHGSALGELLEKFVLLLTENPSECYFPSVEYTATDANVKNESLSSVQQL
GMKMTVRYGRFLNLLKDGAENELALVLKHCEKFLKQQQSPVTSSLLCLQGNYAGHDWFVSSLFMIMLGDK
GKTFHFLQHFSRLLTSAFLWVPRLHNSRYLPVDTLGTGIHPIYFCSAHYIEMLLKAEVPLVFSAFHMSGF
APSQICLQWITQCFWNYLDWIEICHYIATCVVLGPDYQVYVCIAVLKHLQRDILQHTQTQDLQVFLKEEA
LHGFRVSNYFEYMENLEQNYRPVLLRDMRSIRVQNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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