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Report for CCDS50914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50914.1 Public Mus musculus 3 Erich6 23 108 98 CCDS HistoryNCBI Gene:545527Re-query CCDS DB by CCDS ID:50914.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50914.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041115.6 ENSMUSP00000040882.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041115.6Link to Ensembl Protein Viewer:ENSMUSP00000040882.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000041115Re-query CCDS DB by Protein ID:ENSMUSP00000040882
Original member Current member NCBI NM_001081262.1 NP_001074731.1 Accepted alive Link to Nucleotide Sequence:NM_001081262.1Link to Protein Sequence:NP_001074731.1Re-query CCDS DB by Nucleotide ID:NM_001081262Re-query CCDS DB by Protein ID:NP_001074731Link to BLAST:NP_001074731.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074731.1 713 D3Z6S9 713 100% 0 0

Chromosomal Locations for CCDS 50914.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 58616310 58616573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58618702 58618930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58621179 58621334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58622363 58622478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58623170 58623260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58624288 58624386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58624998 58625155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58626576 58626686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58629260 58629376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58629468 58629523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58629847 58629909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58630660 58630754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58636061 58636118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58636636 58637164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2142 nt):
ATGCGCCCGCGTCAGGGAGTGCGGAAGCCTGGAAAGAGGAACACAAAGTCAAAAAAGCCAGATAAAGCCT
CGAAGGGAAAAGAGATGGTAGAGGCAGAGAAAGCGCAGAAGATGCAGAGAGAGCAGGGGGAGGAGTTGGA
GCAGGAGGGACAGGAGGAGGAGGTGGAGGAAGAGGAAAAGGAGGAGGAGGCCAAGGAGGAGCAGGGAGCT
CAGGAGGAGCAGGAGGGGCAGGGAGCTCAGGGGGTGCAAGGGTGGGATGATAGGGAGGGCCAGCCGCAGG
AAAGCCAGAACCTGTTCCCTGAGTCGTTGAACGAAGAAGACATCTGGAAAGCCATAGGCCCCAGTGAAGG
CTTTGACGAAGACTCACCGGAATTTCGTCCCCGCTTAATTAGCGTGGTCAGCCCCAGCCTGAGCACTATG
TCCCCGCCCAGCAAGGTGTCCAGCCCCTCGTGGGGCGAAGAGGAGCCGCTGCCGCTGCCGCACAGGGAGG
GCTCTCCTCCTGCTTCCAGCAGCGGCTCGTCCCACAAAAGCTATCCCAAAATATTTCAAACATTTAAAAA
GGACTTGTCTGAAGTGACTGTAGATAGAGACATGTATCCAAGTTTGTATGAAAGAGTTCAGATGTCAGTA
CAAACAGAAGATGAAAGTTGGCTTCAACGAATTTCTGCTAAAAAGCAGATAAAAAGAATACCATCTATTG
AGATAACGGAAACACTGCCACAAACTCAAGCTTCTATGTTAAGAGAAAATTGGGTAATTAATCCTGAAGA
GCCCAAGCTAAGCATTTTATGTGAGATGGAGTTTAATGAAGACTTTGTAAATTTGTTTGAAACTTCTCTA
AGGACGTTACCCAGCGTTGGGCCACCGGCCATTCTGTCCTTTAGGAAAGAGTACTCGTATATGGATGTGA
ACTTTAAGGATGAACAAGAGCTGGAACCCACGTGTGAATTTTGTGGAAGTGATCTACGGTCATTGTTTTT
TAAGATGGACACTTCCTCTGAAAACATTCAAACCAAACCAAAATCATATAGGTGCTGCTGTCTTCAGTTT
CAAAATCTTCTTGATTATATCAACGAGGAAATGCTAACCATCAAACCCCCTGCGCTGGAGTTAATCAGCA
TCTCACCTCATGCAGCGTATGGCAGTGACATTGACAGGCTCAAGGCAAAGGAGAAGGCTCTGCAGAAAAA
ACAAGAGCGTCAGATGGCCAGACATTTTGCGATAATATCACATGATCAGAGCCCCACAACAACTGATGAT
GGTAAGACTTTTGTCACGGATGCCCTGGAAATTCAGAAAACATACTCTCAGAATTCCATCACCCAGAGAG
AAGCTGGTAACATTTTGAAATACAGCTTCCCTTGCTCTGCCTTCCCATCTTGGCTTAACTTTACCTGTGA
ACAGTCTGTGTGTACGGATCTCATTCACACCGAGATGCGATGTTCAGTGTACTTTGGTTTTGATGCTAGT
GTGGATGGCACGATTCTCTTGACCTATCCGTCTGGAAACCTAGCCATTATCCGATTGCCCAACAAGACAG
ATGGTTTTATTTGTATAATCCAAGAAGACACGCCCACCAACCCTACTATCCTGGCACTGTTTGACTCCTC
CGGCAGAAGCTCCTGCTATCACCCCAATGGAAATGTCTGGGTATACATCAACATACTGGGAGGCCAGTAC
TCAGATCAAGCCGGCAACAGGATACGAACTTGGAACTGGTCAAGTACCATGCCTTCCTCATCCTTTGTCT
CATTTAAACCTGTCTTTCTGGCTTTGAACCGTTACATTGGAATTCGCATCCTAGAACAAGACAAGGTCTC
CATTAATTTTCTAGCTATGGGCCAACAGGCAACAATCAGCCTTGGAACCAAAGTAATGCTCCATGATCCA
GAGGAGGTTCCAGCCCTGTGGTTCCTGAGTGGAGACGACCTTCTGCTGTTGGCCAACTTAATAAAGATCC
GGCGATTGTTCAATAAGCTGGAAGGATGCATGAATTTCCCCATAAGTCAGGCTTGGGAAAAGTTAAAGCA
ACCTCCCTACCTTTCTTCACTCTCTCTAAAACTACTTGCCCTCTGCCATAATTCTGGCATACAGCAAAAA
ACAATGGAAACAATTATAGATCTAATAAAAGAAGAGGAGTAA

Translation (713 aa):
MRPRQGVRKPGKRNTKSKKPDKASKGKEMVEAEKAQKMQREQGEELEQEGQEEEVEEEEKEEEAKEEQGA
QEEQEGQGAQGVQGWDDREGQPQESQNLFPESLNEEDIWKAIGPSEGFDEDSPEFRPRLISVVSPSLSTM
SPPSKVSSPSWGEEEPLPLPHREGSPPASSSGSSHKSYPKIFQTFKKDLSEVTVDRDMYPSLYERVQMSV
QTEDESWLQRISAKKQIKRIPSIEITETLPQTQASMLRENWVINPEEPKLSILCEMEFNEDFVNLFETSL
RTLPSVGPPAILSFRKEYSYMDVNFKDEQELEPTCEFCGSDLRSLFFKMDTSSENIQTKPKSYRCCCLQF
QNLLDYINEEMLTIKPPALELISISPHAAYGSDIDRLKAKEKALQKKQERQMARHFAIISHDQSPTTTDD
GKTFVTDALEIQKTYSQNSITQREAGNILKYSFPCSAFPSWLNFTCEQSVCTDLIHTEMRCSVYFGFDAS
VDGTILLTYPSGNLAIIRLPNKTDGFICIIQEDTPTNPTILALFDSSGRSSCYHPNGNVWVYINILGGQY
SDQAGNRIRTWNWSSTMPSSSFVSFKPVFLALNRYIGIRILEQDKVSINFLAMGQQATISLGTKVMLHDP
EEVPALWFLSGDDLLLLANLIKIRRLFNKLEGCMNFPISQAWEKLKQPPYLSSLSLKLLALCHNSGIQQK
TMETIIDLIKEEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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