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Report for CCDS63241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63241.1 Public Homo sapiens 20 NAPB 24 110 108 CCDS HistoryNCBI Gene:63908Re-query CCDS DB by CCDS ID:63241.1Re-query CCDS DB by GeneID:63908See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 63241.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398425.7 ENSP00000381459.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398425.7Link to Ensembl Protein Viewer:ENSP00000381459.3Re-query CCDS DB by Nucleotide ID:ENST00000398425Re-query CCDS DB by Protein ID:ENSP00000381459
Original member Current member NCBI NM_001283026.2 NP_001269955.1 Accepted alive Link to Nucleotide Sequence:NM_001283026.2Link to Protein Sequence:NP_001269955.1Re-query CCDS DB by Nucleotide ID:NM_001283026Re-query CCDS DB by Protein ID:NP_001269955Link to BLAST:NP_001269955.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269955.1 204 Q9H115-3 204 100% 0 0

Chromosomal Locations for CCDS 63241.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 23377376 23377486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23379445 23379495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23379867 23379935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23381213 23381317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23389946 23390030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23390209 23390264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23394922 23394999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23397072 23397131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGACTCTGCTACCAGCTTTGTGGATGCTGGAAATGCTTACAAAAAGGCAGATCCCCAAGGGAAGGTTTA
CAATTGCAGCCAAGCACCACATTACTATTGCAGAGATCTATGAGACTGAACTTGTAGACATTGAGAAGGC
TATTGCACATTATGAACAATCTGCTGATTATTACAAAGGAGAAGAATCCAACAGCTCAGCAAACAAGTGT
CTGCTGAAGGTGGCAGCATATGCTGCCCAGCTTGAGCAGTACCAGAAAGCCATTGAGATCTATGAGCAGG
TTGGGGCAAACACAATGGATAATCCTTTGTTGAAATACAGTGCAAAGGATTACTTCTTCAAAGCTGCCCT
CTGCCACTTCATAGTAGACGAGTTGAATGCCAAGCTTGCTCTTGAGAAATATGAGGAAATGTTTCCAGCA
TTTACTGATTCAAGAGAATGTAAATTATTGAAAAAACTCCTAGAAGCTCATGAAGAACAGAACAGTGAAG
CTTACACTGAAGCAGTGAAGGAATTTGACTCAATATCTCGCTTGGATCAGTGGCTGACCACCATGTTGCT
TCGCATCAAAAAGTCCATCCAAGGGGATGGAGAAGGAGATGGAGACCTAAAATGA

Translation (204 aa):
MTLLPALWMLEMLTKRQIPKGRFTIAAKHHITIAEIYETELVDIEKAIAHYEQSADYYKGEESNSSANKC
LLKVAAYAAQLEQYQKAIEIYEQVGANTMDNPLLKYSAKDYFFKAALCHFIVDELNAKLALEKYEEMFPA
FTDSRECKLLKKLLEAHEEQNSEAYTEAVKEFDSISRLDQWLTTMLLRIKKSIQGDGEGDGDLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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