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Report for CCDS26547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26547.1 Public Mus musculus 13 Pdlim7 23 108 98 CCDS HistoryNCBI Gene:67399Re-query CCDS DB by CCDS ID:26547.1Re-query CCDS DB by GeneID:67399See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26547.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069929.12 ENSMUSP00000064219.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069929.12Link to Ensembl Protein Viewer:ENSMUSP00000064219.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069929Re-query CCDS DB by Protein ID:ENSMUSP00000064219
Original member Current member NCBI NM_026131.4 NP_080407.3 Accepted alive Link to Nucleotide Sequence:NM_026131.4Link to Protein Sequence:NP_080407.3Re-query CCDS DB by Nucleotide ID:NM_026131Re-query CCDS DB by Protein ID:NP_080407Link to BLAST:NP_080407.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080407.3 188 Q3TJD7-2 188 100% 0 0

Chromosomal Locations for CCDS 26547.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55507027 55507123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55507330 55507366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55507488 55507624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55507864 55507880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55508780 55508810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55508892 55509043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55512312 55512407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGGATTCCTTCAAGGTGGTGCTGGAAGGGCCAGCCCCTTGGGGCTTCCGTCTGCAAGGGGGCAAGGACT
TCAATGTGCCCCTCTCTATCTCTCGGCTCACGCCCGGAGGCAAAGCTGCACAGGCCGGTGTGGCTGTGGG
AGACTGGGTACTGAATATTGACGGTGAGAACGCGGGCAGCCTCACGCACATCGAAGCCCAGAACAAGATC
CGCGCCTGTGGGGAGCGCCTCAGCCTGGGTCTTAGCAGAGCCCAGCCTGTTCAGAGCAAACCACAGAAGG
TGCAGACCTCTGACAAACAGTTGCTCAGACAGCCGGTCCCCGATGCCAGCAAGCAGCGGCTGATGGAGGA
TACCGAAGACTGGCGGCCGCGGCCGGGGACAGGCCAGTCCCGCTCCTTCCGCATCCTTGCCCACCTCACG
GGCACAGAGTTCATGCAAGACCCGGATGAGGAATTCATGAAGAAGTCAAGGGAAAAGTATGTCCTGGAGC
TACAGAGCCCACGCTATACACGTCTCCGGGACTGGCACCACCAGCGCTCTGCCCACGTGCTCAACGTGCA
GTCATAG

Translation (188 aa):
MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGSLTHIEAQNKI
RACGERLSLGLSRAQPVQSKPQKVQTSDKQLLRQPVPDASKQRLMEDTEDWRPRPGTGQSRSFRILAHLT
GTEFMQDPDEEFMKKSREKYVLELQSPRYTRLRDWHHQRSAHVLNVQS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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