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Report for CCDS53022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53022.1 Public Mus musculus X Gm5935 23 108 98 CCDS HistoryNCBI Gene:546282Re-query CCDS DB by CCDS ID:53022.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53022.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101667.9 ENSMUSP00000099190.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101667.9Link to Ensembl Protein Viewer:ENSMUSP00000099190.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101667Re-query CCDS DB by Protein ID:ENSMUSP00000099190
Original member Current member EBI ENSMUST00000178986.1 ENSMUSP00000136892.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178986.1Link to Ensembl Protein Viewer:ENSMUSP00000136892.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178986Re-query CCDS DB by Protein ID:ENSMUSP00000136892
Original member Current member NCBI NM_001081657.1 NP_001075126.1 Accepted alive Link to Nucleotide Sequence:NM_001081657.1Link to Protein Sequence:NP_001075126.1Re-query CCDS DB by Nucleotide ID:NM_001081657Re-query CCDS DB by Protein ID:NP_001075126Link to BLAST:NP_001075126.1

Chromosomal Locations for CCDS 53022.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 24753266 24753334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 24753654 24753752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 24756199 24756280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 24764562 24764625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 24764938 24765063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 24768186 24768220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 24768760 24768826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 24773479 24773575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGTCTATTAAGAAACTGTGGGTGATACCAAAGGATGGTTACTTATTACTTCTTGACTTTGATTCAGATG
AAGAAGAAGAGCAGGCTCATTCTGAAGTAAAGAGGCCAGCATTTGGCAAACATGAGAATATGCCACCTCA
CGTAGAAGCAGATGAAGATATAAGAGATGAACATGACAGTATGTTGGATAAATCTGGAGAAAACGTAAGT
TTCTCAGAGGAATGGCAGCGTTTTGCACGTTCTGTAGAGACACCAATGGAAAACTGGAATTTGTTAAGTG
GTGAACAGCAAGTTAGGAATGCTTCAGAATTGGACCTTATGGAAGTACAGAATCCAGTAACTCATGATGA
TGGGAATGCAAATCCTGAAGAAGTAGTTGGAGATACACGAAAGAAGATCAACAACAAATTGTGTGAGCAG
AAGTTTGATATGGATATACAGAAATTCAATGAAGAGCAAGAAAAATCAGTGAACAATTATCAAAAAGAAC
AAGAAGCATTAAAACTGTCCGAATGCAGTCAGAGACAGACCCTGGAAGCAATTGAAGACATGCATGAGAA
GTCCATGGAGGGTTTGATGAACATGGAGACCAACAACTACGATATGCTTTTTGATGTAGATGGTGAAGAG
ACATTATGA

Translation (212 aa):
MSIKKLWVIPKDGYLLLLDFDSDEEEEQAHSEVKRPAFGKHENMPPHVEADEDIRDEHDSMLDKSGENVS
FSEEWQRFARSVETPMENWNLLSGEQQVRNASELDLMEVQNPVTHDDGNANPEEVVGDTRKKINNKLCEQ
KFDMDIQKFNEEQEKSVNNYQKEQEALKLSECSQRQTLEAIEDMHEKSMEGLMNMETNNYDMLFDVDGEE
TL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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