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Report for CCDS52297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52297.1 Public Mus musculus 7 Vmn2r75 23 108 98 CCDS HistoryNCBI Gene:546981Re-query CCDS DB by CCDS ID:52297.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52297.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167830.2 ENSMUSP00000126973.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167830.2Link to Ensembl Protein Viewer:ENSMUSP00000126973.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167830Re-query CCDS DB by Protein ID:ENSMUSP00000126973
Original member Current member NCBI NM_001102578.1 NP_001096048.1 Accepted alive Link to Nucleotide Sequence:NM_001102578.1Link to Protein Sequence:NP_001096048.1Re-query CCDS DB by Nucleotide ID:NM_001102578Re-query CCDS DB by Protein ID:NP_001096048Link to BLAST:NP_001096048.1

Chromosomal Locations for CCDS 52297.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 86148042 86148958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86163165 86163288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86164072 86164299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86164991 86165797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86166169 86166448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86171519 86171724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2562 nt):
ATGAAAAATACGTTCTCTTTGATCTCTGTCTTCTGGTTTCTGAAGATTTCCATTATTTTCTGTCATTTGA
GTGACCCCAGATGCTTTTGGAGAATAAAAGACGCCAAAAATGATCTAGGAGATAAAGAAACTTATTGTTT
CTTTTCTATTTACACTAAGCAAGGTTATGTGAAGAATGATTATTTCAGTTGGAATCTAGACAAGAAGGTG
ACACCCAAGACAAACCATTTAATTTTCTCTGTTTATCTTGCCATGGAAGAAATAAATAAGAATGGACATA
TTTTACCCAACATTTCTCTGCTAGTTAATATTGAATGTGGCCTAGAATTATATGGTGAGAGAACTGGTTT
GGCATTTAAAAGTGAGGAATTTATTCCTAATTACTACTGCAGAAATCATAGAAAATATTTAATTGTACTT
ACAACACCTAAATGGGGAGTATCTACAAGTCTTGGACCATTACTGTACATCTCTAGAGTTCCTGAGCTCT
ACTGTGGTCATTTTCATCTTCTTCTGAACGATAATGAACAATTTCCTCATCTTTACCAGATATCTCCCAA
GGACACATCTCTACCACTAGCCATGGTGTCCCTAGTGGTTCATTTCAGATGGAACTGGATAGGAGCAATA
GTTACAAATGATGACCATGGAATTCAATTCCTTTCTGAATTGAGAGGAGAAATGCAAAAACACATTGTCT
GTTTATCAGTTGCGATTATTATCCAAACTGAGAAGTTCATGGCCCTTAAAGAGTTTCGTATGAATTATAA
CAAAATTGCAATGTCATCAGCAACAGTTGTAATAGTTTATGGAGACAAAGACTCTCCCATACAGTTTACC
CTCATTATGTGGAAATCTGAAGGCATTTGGAGAATCTGGGTTAGTGTGTCACAATTTGATATGATCACAG
TTATAGGAGATTTTTTACTATACTCCTCCACGGGGAGTTTCATTTTTTCACACCAGCAATCTGAAATATC
TGGTTTTGAAAAATTCATCCAAACAGTACACCCTTCAAACTACAGTAGTGAATTTTCCCTTGCCAAACTG
TGGTGGACATATTTTACATGTTCTTTGCCACCGTCTAATTGTAAGAAGCTAAAGAATTGTCCAATCAAAA
CTGTATTTAAATGGTTATTCATGACACCTATTGGAATGTCCATGAGTGATATATCCTATAACTTATACAA
TGCTATGTATGCTGTGGCCCACTCAGTGCATGAGATGCTTCTGCAACAAGTAGACATATGGTCAACAAAT
GCTGGGACGGAACTGGAATTCGACTCTTGGAAGATGTTCTCTATTCTGAAGACCTTAAAATTTGTAAATC
CTGCTGGAGACCTAGTCAACATGAACCAGAATTTAAAACAGGATACAGAGTATGACATTTTCTATATCCC
AAATTTCCAAAAATATTATGGTCTTAAAATGAAAATAGGAAGATTTTCAGGTTATCTTCCAAGTGGTCAA
CAGCTATATATGTCTAAGGAAATGATGGAGTGGGCTACAGATATGGATCAGATTCTACCCTCAATATGTA
GTATGCCTTGCAGACCAGGACTCAGAAAATCCCCTCAGGAAGAAAAGGACATCTGCTGTTTTGTTTGTAA
CCCCTGCCCAGAAAATGAAATTTCAAACATGACAAATATGGATCAGTGTGTGAAATGTCCAGAAGATCAA
TATGCCAATGAAGACCAAACACTCTGCCTCCAAAAAGTTGTGGATGTTTTAGATTATAGAGACCCCTTGG
GAAAGTCTCTGGCTGGCTTTGCTCTATGCTTCTCTGTCCTTACATCTATTGTACTCTGTGTCTTCCTGAA
ACACCGAGAATCTCCCATAGTCAAAGCCAATAACCAAACTCTCAGCTATGTCCTACTCATCTCCCTCATA
TTTTGTTTTATCTGTTCCTTGCTTTACATTGGTCATCCCACTATGTTCATCTGTATTCTGCAACAGACTG
CATTTGCCATTGCATTCACTGTGGCTGCCTCTACTGTCTTGGCCAAAACGATTACTGTAATACTGGCATT
CAAGATCACTGTCCCAGGAAGAATGAGGTGGCTGCTTGTGTCAGGGGCACCCAAATACATAATTTTTGTG
TGCACCATGATTCAGCTGATTTTCTGTGGAATCTGGCTGGGAACTTCTCCTCCATTTGTTGAAACTGATG
TACACATGACACATGGCCACATCATCATTGTTTGCAACAAAGGTTCAGTGATTGCCTTCTACTGTGTCCT
TGGATACATGGGCTCTGTTGCTCTAGCAAGTTTCACTGTAGCTTTCTTGTCGAGGAAACTGCCTGATACA
TTCAATGAAGCCAAGCTCTTGACATTTAGCATGCTGGTGTTCTGCAGTGTCTGGATCACTTTCATCCCTG
TGTACCACAGCACCAAAGGAAAGACTATGGTTGCTGTGGAAGTTTTCTGTATCTTGGCCTCCAGTGCAGG
GCTGCTTCTTTGCATTTATGCCCCAAAGTGTTATATTATTTTATTAAGACCACAGAAAAATTCATTTTAC
AAGTTCAGGAAGCCACATTCTAAATCTGAAAATATAAGTTAA

Translation (853 aa):
MKNTFSLISVFWFLKISIIFCHLSDPRCFWRIKDAKNDLGDKETYCFFSIYTKQGYVKNDYFSWNLDKKV
TPKTNHLIFSVYLAMEEINKNGHILPNISLLVNIECGLELYGERTGLAFKSEEFIPNYYCRNHRKYLIVL
TTPKWGVSTSLGPLLYISRVPELYCGHFHLLLNDNEQFPHLYQISPKDTSLPLAMVSLVVHFRWNWIGAI
VTNDDHGIQFLSELRGEMQKHIVCLSVAIIIQTEKFMALKEFRMNYNKIAMSSATVVIVYGDKDSPIQFT
LIMWKSEGIWRIWVSVSQFDMITVIGDFLLYSSTGSFIFSHQQSEISGFEKFIQTVHPSNYSSEFSLAKL
WWTYFTCSLPPSNCKKLKNCPIKTVFKWLFMTPIGMSMSDISYNLYNAMYAVAHSVHEMLLQQVDIWSTN
AGTELEFDSWKMFSILKTLKFVNPAGDLVNMNQNLKQDTEYDIFYIPNFQKYYGLKMKIGRFSGYLPSGQ
QLYMSKEMMEWATDMDQILPSICSMPCRPGLRKSPQEEKDICCFVCNPCPENEISNMTNMDQCVKCPEDQ
YANEDQTLCLQKVVDVLDYRDPLGKSLAGFALCFSVLTSIVLCVFLKHRESPIVKANNQTLSYVLLISLI
FCFICSLLYIGHPTMFICILQQTAFAIAFTVAASTVLAKTITVILAFKITVPGRMRWLLVSGAPKYIIFV
CTMIQLIFCGIWLGTSPPFVETDVHMTHGHIIIVCNKGSVIAFYCVLGYMGSVALASFTVAFLSRKLPDT
FNEAKLLTFSMLVFCSVWITFIPVYHSTKGKTMVAVEVFCILASSAGLLLCIYAPKCYIILLRPQKNSFY
KFRKPHSKSENIS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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